Cluster: MurphyR_2019_SRR7411400_bin.18_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411400_bin.18
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411400_bin.18_k141_20807 | MurphyR_2019_SRR7411400_bin.18_k141_20807_14 | 13995 | 14438 | + | 4.A.6.1.16 |
| pfam | MurphyR_2019_SRR7411400_bin.18_k141_20807 | MurphyR_2019_SRR7411400_bin.18_k141_20807_15 | 14438 | 14719 | + | YajC |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_20807 | MurphyR_2019_SRR7411400_bin.18_k141_20807_16 | 14756 | 15238 | + | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_20807 | MurphyR_2019_SRR7411400_bin.18_k141_20807_17 | 15330 | 16130 | + | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_20807 | MurphyR_2019_SRR7411400_bin.18_k141_20807_18 | 16120 | 17202 | + | 4.A.6.1.4 |
| TF | MurphyR_2019_SRR7411400_bin.18_k141_20807 | MurphyR_2019_SRR7411400_bin.18_k141_20807_19 | 17388 | 18119 | + | GntR |
| STP | MurphyR_2019_SRR7411400_bin.18_k141_20807 | MurphyR_2019_SRR7411400_bin.18_k141_20807_20 | 18234 | 19400 | + | SIS | SIS |
| CAZyme | MurphyR_2019_SRR7411400_bin.18_k141_20807 | MurphyR_2019_SRR7411400_bin.18_k141_20807_21 | 19518 | 20687 | + | CE9 |
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_20807_14
Type: TC
Location: 13995 - 14438 (+)
Type: TC
Location: 13995 - 14438 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_20807_15
Type: pfam
Location: 14438 - 14719 (+)
Type: pfam
Location: 14438 - 14719 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_20807_16
Type: TC
Location: 14756 - 15238 (+)
Type: TC
Location: 14756 - 15238 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_20807_17
Type: TC
Location: 15330 - 16130 (+)
Type: TC
Location: 15330 - 16130 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_20807_18
Type: TC
Location: 16120 - 17202 (+)
Type: TC
Location: 16120 - 17202 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_20807_19
Type: TF
Location: 17388 - 18119 (+)
Type: TF
Location: 17388 - 18119 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_20807_20
Type: STP
Location: 18234 - 19400 (+)
Type: STP
Location: 18234 - 19400 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_20807_21
Type: CAZyme
Location: 19518 - 20687 (+)
Type: CAZyme
Location: 19518 - 20687 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.