Cluster: MurphyR_2019_SRR7411361_bin.7_CGC8
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411361_bin.7
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_273 | 313547 | 314716 | - | CE9 |
| STP | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_274 | 314834 | 316000 | - | SIS | SIS |
| TF | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_275 | 316115 | 316846 | - | GntR |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_276 | 317032 | 318114 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_277 | 318104 | 318904 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_278 | 318995 | 319477 | - | 4.A.6.1.4 |
| pfam | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_279 | 319514 | 319795 | - | YajC |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_280 | 319795 | 320238 | - | 4.A.6.1.16 |
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_273
Type: CAZyme
Location: 313547 - 314716 (-)
Type: CAZyme
Location: 313547 - 314716 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_274
Type: STP
Location: 314834 - 316000 (-)
Type: STP
Location: 314834 - 316000 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_275
Type: TF
Location: 316115 - 316846 (-)
Type: TF
Location: 316115 - 316846 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_276
Type: TC
Location: 317032 - 318114 (-)
Type: TC
Location: 317032 - 318114 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_277
Type: TC
Location: 318104 - 318904 (-)
Type: TC
Location: 318104 - 318904 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_278
Type: TC
Location: 318995 - 319477 (-)
Type: TC
Location: 318995 - 319477 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_279
Type: pfam
Location: 319514 - 319795 (-)
Type: pfam
Location: 319514 - 319795 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_280
Type: TC
Location: 319795 - 320238 (-)
Type: TC
Location: 319795 - 320238 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.