Cluster: MurphyR_2019_SRR7411361_bin.7_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MurphyR_2019_SRR7411361_bin.7
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_251 | 285724 | 286062 | - | 4.A.3.1.2 |
| TF | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_252 | 286277 | 287281 | - | LacI |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_253 | 287639 | 289414 | + | 4.A.3.1.1 |
| CAZyme | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_254 | 289481 | 290920 | + | GH1 |
| TF | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_255 | 291198 | 292235 | - | LacI |
| CAZyme | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_256 | 292577 | 294019 | + | GH1 |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_257 | 294196 | 295956 | + | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_258 | 296214 | 297224 | - | LacI |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_259 | 297499 | 299277 | + | 4.A.3.1.1 |
| CAZyme | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_260 | 299355 | 300776 | + | GH1 |
| pfam | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_261 | 301146 | 302378 | + | Fic |
| STP | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_262 | 302427 | 302756 | - | DeoRC |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_263 | 302919 | 304613 | - | 4.A.3.1.1 |
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_251
Type: TC
Location: 285724 - 286062 (-)
Type: TC
Location: 285724 - 286062 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_252
Type: TF
Location: 286277 - 287281 (-)
Type: TF
Location: 286277 - 287281 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_253
Type: TC
Location: 287639 - 289414 (+)
Type: TC
Location: 287639 - 289414 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_254
Type: CAZyme
Location: 289481 - 290920 (+)
Type: CAZyme
Location: 289481 - 290920 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_255
Type: TF
Location: 291198 - 292235 (-)
Type: TF
Location: 291198 - 292235 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_256
Type: CAZyme
Location: 292577 - 294019 (+)
Type: CAZyme
Location: 292577 - 294019 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_257
Type: TC
Location: 294196 - 295956 (+)
Type: TC
Location: 294196 - 295956 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_258
Type: TF
Location: 296214 - 297224 (-)
Type: TF
Location: 296214 - 297224 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_259
Type: TC
Location: 297499 - 299277 (+)
Type: TC
Location: 297499 - 299277 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_260
Type: CAZyme
Location: 299355 - 300776 (+)
Type: CAZyme
Location: 299355 - 300776 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_261
Type: pfam
Location: 301146 - 302378 (+)
Type: pfam
Location: 301146 - 302378 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_262
Type: STP
Location: 302427 - 302756 (-)
Type: STP
Location: 302427 - 302756 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_263
Type: TC
Location: 302919 - 304613 (-)
Type: TC
Location: 302919 - 304613 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.