Cluster: MurphyR_2019_SRR7411361_bin.7_CGC5
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411361_bin.7
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_105 | 107609 | 108985 | - | GH13_20 |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_106 | 109141 | 110337 | - | 2.A.1.2.18 |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_107 | 110458 | 112818 | - | 9.A.8.1.6 |
| peptidase | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_108 | 113292 | 114191 | - | S09.UPW |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_109 | 114435 | 114998 | + | 4.A.1.2.6 |
| pfam | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_110 | 115180 | 116583 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_111 | 116843 | 117628 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_112 | 117790 | 118770 | + | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_113 | 118974 | 119897 | + | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_7040 | MurphyR_2019_SRR7411361_bin.7_k141_7040_114 | 119890 | 120684 | + | 3.A.1.34.1 |
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_105
Type: CAZyme
Location: 107609 - 108985 (-)
Type: CAZyme
Location: 107609 - 108985 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_106
Type: TC
Location: 109141 - 110337 (-)
Type: TC
Location: 109141 - 110337 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_107
Type: TC
Location: 110458 - 112818 (-)
Type: TC
Location: 110458 - 112818 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_108
Type: peptidase
Location: 113292 - 114191 (-)
Type: peptidase
Location: 113292 - 114191 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_109
Type: TC
Location: 114435 - 114998 (+)
Type: TC
Location: 114435 - 114998 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_110
Type: pfam
Location: 115180 - 116583 (+)
Type: pfam
Location: 115180 - 116583 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_111
Type:
Location: 116843 - 117628 (+)
Type:
Location: 116843 - 117628 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_112
Type: TC
Location: 117790 - 118770 (+)
Type: TC
Location: 117790 - 118770 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_113
Type: TC
Location: 118974 - 119897 (+)
Type: TC
Location: 118974 - 119897 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_7040_114
Type: TC
Location: 119890 - 120684 (+)
Type: TC
Location: 119890 - 120684 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.