Cluster: MurphyR_2019_SRR7411361_bin.7_CGC19
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: MurphyR_2019_SRR7411361_bin.7
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411361_bin.7_k141_23475 | MurphyR_2019_SRR7411361_bin.7_k141_23475_19 | 19580 | 20971 | - | 2.A.66.2.23 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7411361_bin.7_k141_23475 | MurphyR_2019_SRR7411361_bin.7_k141_23475_20 | 20988 | 21575 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MurphyR_2019_SRR7411361_bin.7_k141_23475 | MurphyR_2019_SRR7411361_bin.7_k141_23475_21 | 21511 | 22413 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MurphyR_2019_SRR7411361_bin.7_k141_23475 | MurphyR_2019_SRR7411361_bin.7_k141_23475_22 | 22421 | 23371 | - | GT2 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7411361_bin.7_k141_23475 | MurphyR_2019_SRR7411361_bin.7_k141_23475_23 | 23373 | 23537 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MurphyR_2019_SRR7411361_bin.7_k141_23475 | MurphyR_2019_SRR7411361_bin.7_k141_23475_24 | 23882 | 25024 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MurphyR_2019_SRR7411361_bin.7_k141_23475 | MurphyR_2019_SRR7411361_bin.7_k141_23475_25 | 25021 | 25917 | - | GT2 |
| CAZyme | MurphyR_2019_SRR7411361_bin.7_k141_23475 | MurphyR_2019_SRR7411361_bin.7_k141_23475_26 | 25917 | 26660 | - | GT32 |
| pfam | MurphyR_2019_SRR7411361_bin.7_k141_23475 | MurphyR_2019_SRR7411361_bin.7_k141_23475_27 | 26665 | 27150 | - | Glyco_tran_28_C |
| pfam | MurphyR_2019_SRR7411361_bin.7_k141_23475 | MurphyR_2019_SRR7411361_bin.7_k141_23475_28 | 27162 | 27569 | - | Alg14 |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_23475 | MurphyR_2019_SRR7411361_bin.7_k141_23475_29 | 27630 | 28379 | - | 9.B.18.1.2 |
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_23475_19
Type: TC
Location: 19580 - 20971 (-)
Type: TC
Location: 19580 - 20971 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_23475_20
Type:
Location: 20988 - 21575 (+)
Type:
Location: 20988 - 21575 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_23475_21
Type:
Location: 21511 - 22413 (-)
Type:
Location: 21511 - 22413 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_23475_22
Type: CAZyme
Location: 22421 - 23371 (-)
Type: CAZyme
Location: 22421 - 23371 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_23475_23
Type:
Location: 23373 - 23537 (-)
Type:
Location: 23373 - 23537 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_23475_24
Type:
Location: 23882 - 25024 (-)
Type:
Location: 23882 - 25024 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_23475_25
Type: CAZyme
Location: 25021 - 25917 (-)
Type: CAZyme
Location: 25021 - 25917 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_23475_26
Type: CAZyme
Location: 25917 - 26660 (-)
Type: CAZyme
Location: 25917 - 26660 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_23475_27
Type: pfam
Location: 26665 - 27150 (-)
Type: pfam
Location: 26665 - 27150 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_23475_28
Type: pfam
Location: 27162 - 27569 (-)
Type: pfam
Location: 27162 - 27569 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_23475_29
Type: TC
Location: 27630 - 28379 (-)
Type: TC
Location: 27630 - 28379 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.