Cluster: MurphyR_2019_SRR7411361_bin.7_CGC12
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411361_bin.7
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411361_bin.7_k141_18818 | MurphyR_2019_SRR7411361_bin.7_k141_18818_6 | 6828 | 7658 | - | 3.A.1.132.3 |
| pfam | MurphyR_2019_SRR7411361_bin.7_k141_18818 | MurphyR_2019_SRR7411361_bin.7_k141_18818_7 | 7918 | 10797 | + | UvrA_DNA-bind | UvrA_inter |
| pfam | MurphyR_2019_SRR7411361_bin.7_k141_18818 | MurphyR_2019_SRR7411361_bin.7_k141_18818_8 | 10931 | 11431 | + | tRNA_edit |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_18818 | MurphyR_2019_SRR7411361_bin.7_k141_18818_9 | 11435 | 13738 | + | 2.A.66.4.4 |
| pfam | MurphyR_2019_SRR7411361_bin.7_k141_18818 | MurphyR_2019_SRR7411361_bin.7_k141_18818_10 | 13745 | 15685 | + | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_18818 | MurphyR_2019_SRR7411361_bin.7_k141_18818_11 | 16051 | 17664 | + | 3.A.1.5.27 |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_18818 | MurphyR_2019_SRR7411361_bin.7_k141_18818_12 | 17820 | 18776 | + | 3.A.1.5.38 |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_18818 | MurphyR_2019_SRR7411361_bin.7_k141_18818_13 | 18780 | 20795 | + | 3.A.1.5.25 |
| TC | MurphyR_2019_SRR7411361_bin.7_k141_18818 | MurphyR_2019_SRR7411361_bin.7_k141_18818_14 | 20796 | 21623 | + | 3.A.1.5.27 |
| CAZyme | MurphyR_2019_SRR7411361_bin.7_k141_18818 | MurphyR_2019_SRR7411361_bin.7_k141_18818_15 | 21755 | 22681 | + | CE7 |
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_18818_6
Type: TC
Location: 6828 - 7658 (-)
Type: TC
Location: 6828 - 7658 (-)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_18818_7
Type: pfam
Location: 7918 - 10797 (+)
Type: pfam
Location: 7918 - 10797 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_18818_8
Type: pfam
Location: 10931 - 11431 (+)
Type: pfam
Location: 10931 - 11431 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_18818_9
Type: TC
Location: 11435 - 13738 (+)
Type: TC
Location: 11435 - 13738 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_18818_10
Type: pfam
Location: 13745 - 15685 (+)
Type: pfam
Location: 13745 - 15685 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_18818_11
Type: TC
Location: 16051 - 17664 (+)
Type: TC
Location: 16051 - 17664 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_18818_12
Type: TC
Location: 17820 - 18776 (+)
Type: TC
Location: 17820 - 18776 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_18818_13
Type: TC
Location: 18780 - 20795 (+)
Type: TC
Location: 18780 - 20795 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_18818_14
Type: TC
Location: 20796 - 21623 (+)
Type: TC
Location: 20796 - 21623 (+)
Gene ID: MurphyR_2019_SRR7411361_bin.7_k141_18818_15
Type: CAZyme
Location: 21755 - 22681 (+)
Type: CAZyme
Location: 21755 - 22681 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.