Cluster: MurphyR_2019_SRR7411342_bin.7_CGC10
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7411342_bin.7
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411342_bin.7_k141_30958 | MurphyR_2019_SRR7411342_bin.7_k141_30958_6 | 8196 | 10646 | - | 4.A.1.1.8 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7411342_bin.7_k141_30958 | MurphyR_2019_SRR7411342_bin.7_k141_30958_7 | 10668 | 10784 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | MurphyR_2019_SRR7411342_bin.7_k141_30958 | MurphyR_2019_SRR7411342_bin.7_k141_30958_8 | 10871 | 11590 | + | GntR |
| TC | MurphyR_2019_SRR7411342_bin.7_k141_30958 | MurphyR_2019_SRR7411342_bin.7_k141_30958_9 | 11897 | 13213 | + | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7411342_bin.7_k141_30958 | MurphyR_2019_SRR7411342_bin.7_k141_30958_10 | 13301 | 14155 | + | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7411342_bin.7_k141_30958 | MurphyR_2019_SRR7411342_bin.7_k141_30958_11 | 14155 | 14994 | + | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7411342_bin.7_k141_30958 | MurphyR_2019_SRR7411342_bin.7_k141_30958_12 | 15063 | 16259 | + | 3.A.1.1.22 |
| CAZyme | MurphyR_2019_SRR7411342_bin.7_k141_30958 | MurphyR_2019_SRR7411342_bin.7_k141_30958_13 | 16715 | 18982 | - | GT35 |
| CAZyme | MurphyR_2019_SRR7411342_bin.7_k141_30958 | MurphyR_2019_SRR7411342_bin.7_k141_30958_14 | 19112 | 20617 | - | GH77 |
Gene ID: MurphyR_2019_SRR7411342_bin.7_k141_30958_6
Type: TC
Location: 8196 - 10646 (-)
Type: TC
Location: 8196 - 10646 (-)
Gene ID: MurphyR_2019_SRR7411342_bin.7_k141_30958_7
Type:
Location: 10668 - 10784 (+)
Type:
Location: 10668 - 10784 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.7_k141_30958_8
Type: TF
Location: 10871 - 11590 (+)
Type: TF
Location: 10871 - 11590 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.7_k141_30958_9
Type: TC
Location: 11897 - 13213 (+)
Type: TC
Location: 11897 - 13213 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.7_k141_30958_10
Type: TC
Location: 13301 - 14155 (+)
Type: TC
Location: 13301 - 14155 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.7_k141_30958_11
Type: TC
Location: 14155 - 14994 (+)
Type: TC
Location: 14155 - 14994 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.7_k141_30958_12
Type: TC
Location: 15063 - 16259 (+)
Type: TC
Location: 15063 - 16259 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.7_k141_30958_13
Type: CAZyme
Location: 16715 - 18982 (-)
Type: CAZyme
Location: 16715 - 18982 (-)
Gene ID: MurphyR_2019_SRR7411342_bin.7_k141_30958_14
Type: CAZyme
Location: 19112 - 20617 (-)
Type: CAZyme
Location: 19112 - 20617 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900768435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.