Cluster: MurphyR_2019_SRR7411342_bin.1_CGC8
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411342_bin.1
- CGC Family ID: CGCFAM_00518
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_19 | 21337 | 23316 | - | 4.A.2.1.4 |
| STP | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_20 | 23357 | 24265 | - | PfkB |
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_21 | 24302 | 25639 | - | 2.A.35.1.2 |
| pfam | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_22 | 25698 | 26531 | - | DAP_epimerase | DAP_epimerase |
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_23 | 26735 | 28462 | + | 8.A.7.1.1 |
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_24 | 28577 | 28837 | + | 8.A.8.1.1 |
| pfam | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_25 | 28882 | 29160 | - | Trns_repr_metal |
| CAZyme | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_26 | 29363 | 30163 | + | GT51 |
| pfam | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_27 | 30424 | 31635 | + | Arginosuc_synth | Arginosuc_syn_C |
| pfam | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_28 | 31635 | 33062 | + | Lyase_1 | ASL_C2 |
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_29 | 33511 | 34842 | + | 2.A.3.2.1 |
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_30 | 35483 | 36421 | + | 3.A.1.5.11 |
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_31 | 36421 | 37242 | + | 3.A.1.5.38 |
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_32 | 37325 | 38893 | + | 3.A.1.5.3 |
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_33 | 38906 | 39703 | + | 3.A.1.5.25 |
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_34 | 39696 | 40517 | + | 3.A.1.5.12 |
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_35 | 40719 | 42281 | + | 3.A.1.5.3 |
| pfam | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_36 | 42347 | 43291 | - | DUF3829 |
| TC | MurphyR_2019_SRR7411342_bin.1_k141_17438 | MurphyR_2019_SRR7411342_bin.1_k141_17438_37 | 43543 | 46443 | + | 3.A.17.1.1 |
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_19
Type: TC
Location: 21337 - 23316 (-)
Type: TC
Location: 21337 - 23316 (-)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_20
Type: STP
Location: 23357 - 24265 (-)
Type: STP
Location: 23357 - 24265 (-)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_21
Type: TC
Location: 24302 - 25639 (-)
Type: TC
Location: 24302 - 25639 (-)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_22
Type: pfam
Location: 25698 - 26531 (-)
Type: pfam
Location: 25698 - 26531 (-)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_23
Type: TC
Location: 26735 - 28462 (+)
Type: TC
Location: 26735 - 28462 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_24
Type: TC
Location: 28577 - 28837 (+)
Type: TC
Location: 28577 - 28837 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_25
Type: pfam
Location: 28882 - 29160 (-)
Type: pfam
Location: 28882 - 29160 (-)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_26
Type: CAZyme
Location: 29363 - 30163 (+)
Type: CAZyme
Location: 29363 - 30163 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_27
Type: pfam
Location: 30424 - 31635 (+)
Type: pfam
Location: 30424 - 31635 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_28
Type: pfam
Location: 31635 - 33062 (+)
Type: pfam
Location: 31635 - 33062 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_29
Type: TC
Location: 33511 - 34842 (+)
Type: TC
Location: 33511 - 34842 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_30
Type: TC
Location: 35483 - 36421 (+)
Type: TC
Location: 35483 - 36421 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_31
Type: TC
Location: 36421 - 37242 (+)
Type: TC
Location: 36421 - 37242 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_32
Type: TC
Location: 37325 - 38893 (+)
Type: TC
Location: 37325 - 38893 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_33
Type: TC
Location: 38906 - 39703 (+)
Type: TC
Location: 38906 - 39703 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_34
Type: TC
Location: 39696 - 40517 (+)
Type: TC
Location: 39696 - 40517 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_35
Type: TC
Location: 40719 - 42281 (+)
Type: TC
Location: 40719 - 42281 (+)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_36
Type: pfam
Location: 42347 - 43291 (-)
Type: pfam
Location: 42347 - 43291 (-)
Gene ID: MurphyR_2019_SRR7411342_bin.1_k141_17438_37
Type: TC
Location: 43543 - 46443 (+)
Type: TC
Location: 43543 - 46443 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
Veillonella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.