Cluster: MurphyR_2019_SRR7411286_bin.10_CGC3
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411286_bin.10
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7411286_bin.10_k141_4597 | MurphyR_2019_SRR7411286_bin.10_k141_4597_53 | 56213 | 57589 | - | GH13_20 |
| TC | MurphyR_2019_SRR7411286_bin.10_k141_4597 | MurphyR_2019_SRR7411286_bin.10_k141_4597_54 | 57743 | 58939 | - | 2.A.1.2.18 |
| TC | MurphyR_2019_SRR7411286_bin.10_k141_4597 | MurphyR_2019_SRR7411286_bin.10_k141_4597_55 | 59061 | 61421 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7411286_bin.10_k141_4597 | MurphyR_2019_SRR7411286_bin.10_k141_4597_56 | 61492 | 61833 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | MurphyR_2019_SRR7411286_bin.10_k141_4597 | MurphyR_2019_SRR7411286_bin.10_k141_4597_57 | 61962 | 62861 | - | S09.UPW |
| TC | MurphyR_2019_SRR7411286_bin.10_k141_4597 | MurphyR_2019_SRR7411286_bin.10_k141_4597_58 | 63105 | 63668 | + | 4.A.1.2.6 |
| pfam | MurphyR_2019_SRR7411286_bin.10_k141_4597 | MurphyR_2019_SRR7411286_bin.10_k141_4597_59 | 63850 | 65253 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | MurphyR_2019_SRR7411286_bin.10_k141_4597 | MurphyR_2019_SRR7411286_bin.10_k141_4597_60 | 65512 | 66297 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MurphyR_2019_SRR7411286_bin.10_k141_4597 | MurphyR_2019_SRR7411286_bin.10_k141_4597_61 | 66458 | 67438 | + | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7411286_bin.10_k141_4597 | MurphyR_2019_SRR7411286_bin.10_k141_4597_62 | 67642 | 68565 | + | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7411286_bin.10_k141_4597 | MurphyR_2019_SRR7411286_bin.10_k141_4597_63 | 68558 | 69352 | + | 3.A.1.34.1 |
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_4597_53
Type: CAZyme
Location: 56213 - 57589 (-)
Type: CAZyme
Location: 56213 - 57589 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_4597_54
Type: TC
Location: 57743 - 58939 (-)
Type: TC
Location: 57743 - 58939 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_4597_55
Type: TC
Location: 59061 - 61421 (-)
Type: TC
Location: 59061 - 61421 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_4597_56
Type:
Location: 61492 - 61833 (-)
Type:
Location: 61492 - 61833 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_4597_57
Type: peptidase
Location: 61962 - 62861 (-)
Type: peptidase
Location: 61962 - 62861 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_4597_58
Type: TC
Location: 63105 - 63668 (+)
Type: TC
Location: 63105 - 63668 (+)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_4597_59
Type: pfam
Location: 63850 - 65253 (+)
Type: pfam
Location: 63850 - 65253 (+)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_4597_60
Type:
Location: 65512 - 66297 (+)
Type:
Location: 65512 - 66297 (+)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_4597_61
Type: TC
Location: 66458 - 67438 (+)
Type: TC
Location: 66458 - 67438 (+)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_4597_62
Type: TC
Location: 67642 - 68565 (+)
Type: TC
Location: 67642 - 68565 (+)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_4597_63
Type: TC
Location: 68558 - 69352 (+)
Type: TC
Location: 68558 - 69352 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937982065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.