Cluster: MurphyR_2019_SRR7411286_bin.10_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: MurphyR_2019_SRR7411286_bin.10
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411286_bin.10_k141_10912 | MurphyR_2019_SRR7411286_bin.10_k141_10912_11 | 12741 | 14207 | - | 2.A.66.2.23 |
| pfam | MurphyR_2019_SRR7411286_bin.10_k141_10912 | MurphyR_2019_SRR7411286_bin.10_k141_10912_12 | 14292 | 15239 | - | ATPgrasp_TupA |
| pfam | MurphyR_2019_SRR7411286_bin.10_k141_10912 | MurphyR_2019_SRR7411286_bin.10_k141_10912_13 | 15383 | 16471 | - | EpsG |
| CAZyme | MurphyR_2019_SRR7411286_bin.10_k141_10912 | MurphyR_2019_SRR7411286_bin.10_k141_10912_14 | 16468 | 17571 | - | GT4 |
| pfam | MurphyR_2019_SRR7411286_bin.10_k141_10912 | MurphyR_2019_SRR7411286_bin.10_k141_10912_15 | 17568 | 18515 | - | C5-epim_C |
| CAZyme | MurphyR_2019_SRR7411286_bin.10_k141_10912 | MurphyR_2019_SRR7411286_bin.10_k141_10912_16 | 18515 | 19807 | - | GT4 |
| pfam | MurphyR_2019_SRR7411286_bin.10_k141_10912 | MurphyR_2019_SRR7411286_bin.10_k141_10912_17 | 19813 | 21084 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | MurphyR_2019_SRR7411286_bin.10_k141_10912 | MurphyR_2019_SRR7411286_bin.10_k141_10912_18 | 21128 | 22045 | - | GT2 |
| TC | MurphyR_2019_SRR7411286_bin.10_k141_10912 | MurphyR_2019_SRR7411286_bin.10_k141_10912_19 | 22049 | 22813 | - | 9.B.18.1.2 |
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_10912_11
Type: TC
Location: 12741 - 14207 (-)
Type: TC
Location: 12741 - 14207 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_10912_12
Type: pfam
Location: 14292 - 15239 (-)
Type: pfam
Location: 14292 - 15239 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_10912_13
Type: pfam
Location: 15383 - 16471 (-)
Type: pfam
Location: 15383 - 16471 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_10912_14
Type: CAZyme
Location: 16468 - 17571 (-)
Type: CAZyme
Location: 16468 - 17571 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_10912_15
Type: pfam
Location: 17568 - 18515 (-)
Type: pfam
Location: 17568 - 18515 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_10912_16
Type: CAZyme
Location: 18515 - 19807 (-)
Type: CAZyme
Location: 18515 - 19807 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_10912_17
Type: pfam
Location: 19813 - 21084 (-)
Type: pfam
Location: 19813 - 21084 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_10912_18
Type: CAZyme
Location: 21128 - 22045 (-)
Type: CAZyme
Location: 21128 - 22045 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_10912_19
Type: TC
Location: 22049 - 22813 (-)
Type: TC
Location: 22049 - 22813 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937982065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.