Cluster: MurphyR_2019_SRR7411286_bin.10_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411286_bin.10
- CGC Family ID: CGCFAM_00008
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411286_bin.10_k141_9888 | MurphyR_2019_SRR7411286_bin.10_k141_9888_4 | 3172 | 5583 | - | 9.B.144.1.5 |
| TC | MurphyR_2019_SRR7411286_bin.10_k141_9888 | MurphyR_2019_SRR7411286_bin.10_k141_9888_5 | 5567 | 5914 | - | 4.D.2.1.9 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7411286_bin.10_k141_9888 | MurphyR_2019_SRR7411286_bin.10_k141_9888_6 | 6342 | 6491 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MurphyR_2019_SRR7411286_bin.10_k141_9888 | MurphyR_2019_SRR7411286_bin.10_k141_9888_7 | 6543 | 7514 | - | GT81 |
| TC | MurphyR_2019_SRR7411286_bin.10_k141_9888 | MurphyR_2019_SRR7411286_bin.10_k141_9888_8 | 7675 | 8520 | + | 3.A.1.103.6 |
| TC | MurphyR_2019_SRR7411286_bin.10_k141_9888 | MurphyR_2019_SRR7411286_bin.10_k141_9888_9 | 8532 | 9299 | + | 3.A.1.103.1 |
| TC | MurphyR_2019_SRR7411286_bin.10_k141_9888 | MurphyR_2019_SRR7411286_bin.10_k141_9888_10 | 9506 | 10492 | + | 9.B.97.6.3 |
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_9888_4
Type: TC
Location: 3172 - 5583 (-)
Type: TC
Location: 3172 - 5583 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_9888_5
Type: TC
Location: 5567 - 5914 (-)
Type: TC
Location: 5567 - 5914 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_9888_6
Type:
Location: 6342 - 6491 (+)
Type:
Location: 6342 - 6491 (+)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_9888_7
Type: CAZyme
Location: 6543 - 7514 (-)
Type: CAZyme
Location: 6543 - 7514 (-)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_9888_8
Type: TC
Location: 7675 - 8520 (+)
Type: TC
Location: 7675 - 8520 (+)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_9888_9
Type: TC
Location: 8532 - 9299 (+)
Type: TC
Location: 8532 - 9299 (+)
Gene ID: MurphyR_2019_SRR7411286_bin.10_k141_9888_10
Type: TC
Location: 9506 - 10492 (+)
Type: TC
Location: 9506 - 10492 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp937982065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7411286_bin.10_k141_9888_5 | vegan > omnivore | 1.15803 | 0.01057 |
| MurphyR_2019_SRR7411286_bin.10_k141_9888_6 | vegetarian > omnivore | 1.05524 | 0.04305 |