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Cluster: MurphyR_2019_SRR7411277_bin.4_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_10 7681 8412 - 3.A.1.125.3
TF MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_11 9019 9456 + MarR
TC MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_12 9458 10162 + 3.A.1.15.3
TC MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_13 10155 10958 + 3.A.1.15.3
TC MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_14 10961 12466 + 3.A.1.15.3
pfam MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_15 12606 13151 + DUF6287
CAZyme MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_16 13187 15262 - GH92
CAZyme MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_17 15478 16758 + GH125
CAZyme MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_18 16944 19589 + GH38
pfam MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_19 19673 20542 + ROK
CAZyme MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_20 20536 22416 + GH20
TC MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_21 22641 23570 + 3.A.1.1.10
TC MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_22 23584 24516 + 3.A.1.1.29
STP MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_23 24596 26077 + SBP_bac_1
TC MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_24 26248 26859 + 9.B.28.1.12
TC MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_25 26862 28508 + 8.A.59.2.1
TF MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_26 28519 29823 + HTH_AraC
pfam MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_27 29864 30718 - MTS | Methyltransf_11 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 | Zn_ribbon_RlmA
TC MurphyR_2019_SRR7411277_bin.4_k141_4599 MurphyR_2019_SRR7411277_bin.4_k141_4599_28 31028 31894 + 3.A.1.130.1
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_10
Type: TC
Location: 7681 - 8412 (-)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_11
Type: TF
Location: 9019 - 9456 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_12
Type: TC
Location: 9458 - 10162 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_13
Type: TC
Location: 10155 - 10958 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_14
Type: TC
Location: 10961 - 12466 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_15
Type: pfam
Location: 12606 - 13151 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_16
Type: CAZyme
Location: 13187 - 15262 (-)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_17
Type: CAZyme
Location: 15478 - 16758 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_18
Type: CAZyme
Location: 16944 - 19589 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_19
Type: pfam
Location: 19673 - 20542 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_20
Type: CAZyme
Location: 20536 - 22416 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_21
Type: TC
Location: 22641 - 23570 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_22
Type: TC
Location: 23584 - 24516 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_23
Type: STP
Location: 24596 - 26077 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_24
Type: TC
Location: 26248 - 26859 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_25
Type: TC
Location: 26862 - 28508 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_26
Type: TF
Location: 28519 - 29823 (+)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_27
Type: pfam
Location: 29864 - 30718 (-)
Gene ID: MurphyR_2019_SRR7411277_bin.4_k141_4599_28
Type: TC
Location: 31028 - 31894 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Streptococcaceae
→
Genus
Streptococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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