Cluster: MurphyR_2019_SRR7411253_bin.6_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411253_bin.6
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_3307 | MurphyR_2019_SRR7411253_bin.6_k141_3307_116 | 141841 | 143010 | - | CE9 |
| STP | MurphyR_2019_SRR7411253_bin.6_k141_3307 | MurphyR_2019_SRR7411253_bin.6_k141_3307_117 | 143128 | 144294 | - | SIS | SIS |
| TF | MurphyR_2019_SRR7411253_bin.6_k141_3307 | MurphyR_2019_SRR7411253_bin.6_k141_3307_118 | 144409 | 145140 | - | GntR |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_3307 | MurphyR_2019_SRR7411253_bin.6_k141_3307_119 | 145325 | 146407 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_3307 | MurphyR_2019_SRR7411253_bin.6_k141_3307_120 | 146397 | 147197 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_3307 | MurphyR_2019_SRR7411253_bin.6_k141_3307_121 | 147288 | 147770 | - | 4.A.6.1.4 |
| pfam | MurphyR_2019_SRR7411253_bin.6_k141_3307 | MurphyR_2019_SRR7411253_bin.6_k141_3307_122 | 147807 | 148088 | - | YajC |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_3307 | MurphyR_2019_SRR7411253_bin.6_k141_3307_123 | 148088 | 148531 | - | 4.A.6.1.16 |
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_3307_116
Type: CAZyme
Location: 141841 - 143010 (-)
Type: CAZyme
Location: 141841 - 143010 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_3307_117
Type: STP
Location: 143128 - 144294 (-)
Type: STP
Location: 143128 - 144294 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_3307_118
Type: TF
Location: 144409 - 145140 (-)
Type: TF
Location: 144409 - 145140 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_3307_119
Type: TC
Location: 145325 - 146407 (-)
Type: TC
Location: 145325 - 146407 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_3307_120
Type: TC
Location: 146397 - 147197 (-)
Type: TC
Location: 146397 - 147197 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_3307_121
Type: TC
Location: 147288 - 147770 (-)
Type: TC
Location: 147288 - 147770 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_3307_122
Type: pfam
Location: 147807 - 148088 (-)
Type: pfam
Location: 147807 - 148088 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_3307_123
Type: TC
Location: 148088 - 148531 (-)
Type: TC
Location: 148088 - 148531 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7411253_bin.6_k141_3307_122 | vegan > omnivore | 1.01354 | 0.00701 |