Cluster: MurphyR_2019_SRR7411253_bin.6_CGC3
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411253_bin.6
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411253_bin.6_k141_2450 | MurphyR_2019_SRR7411253_bin.6_k141_2450_6 | 6868 | 7698 | - | 3.A.1.132.3 |
| pfam | MurphyR_2019_SRR7411253_bin.6_k141_2450 | MurphyR_2019_SRR7411253_bin.6_k141_2450_7 | 7958 | 10837 | + | UvrA_DNA-bind | UvrA_inter |
| pfam | MurphyR_2019_SRR7411253_bin.6_k141_2450 | MurphyR_2019_SRR7411253_bin.6_k141_2450_8 | 10971 | 11471 | + | tRNA_edit |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_2450 | MurphyR_2019_SRR7411253_bin.6_k141_2450_9 | 11475 | 13778 | + | 2.A.66.4.4 |
| pfam | MurphyR_2019_SRR7411253_bin.6_k141_2450 | MurphyR_2019_SRR7411253_bin.6_k141_2450_10 | 13785 | 15725 | + | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_2450 | MurphyR_2019_SRR7411253_bin.6_k141_2450_11 | 16091 | 17704 | + | 3.A.1.5.27 |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_2450 | MurphyR_2019_SRR7411253_bin.6_k141_2450_12 | 17860 | 18816 | + | 3.A.1.5.38 |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_2450 | MurphyR_2019_SRR7411253_bin.6_k141_2450_13 | 18820 | 20835 | + | 3.A.1.5.25 |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_2450 | MurphyR_2019_SRR7411253_bin.6_k141_2450_14 | 20836 | 21663 | + | 3.A.1.5.27 |
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_2450 | MurphyR_2019_SRR7411253_bin.6_k141_2450_15 | 21795 | 22721 | + | CE7 |
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2450_6
Type: TC
Location: 6868 - 7698 (-)
Type: TC
Location: 6868 - 7698 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2450_7
Type: pfam
Location: 7958 - 10837 (+)
Type: pfam
Location: 7958 - 10837 (+)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2450_8
Type: pfam
Location: 10971 - 11471 (+)
Type: pfam
Location: 10971 - 11471 (+)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2450_9
Type: TC
Location: 11475 - 13778 (+)
Type: TC
Location: 11475 - 13778 (+)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2450_10
Type: pfam
Location: 13785 - 15725 (+)
Type: pfam
Location: 13785 - 15725 (+)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2450_11
Type: TC
Location: 16091 - 17704 (+)
Type: TC
Location: 16091 - 17704 (+)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2450_12
Type: TC
Location: 17860 - 18816 (+)
Type: TC
Location: 17860 - 18816 (+)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2450_13
Type: TC
Location: 18820 - 20835 (+)
Type: TC
Location: 18820 - 20835 (+)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2450_14
Type: TC
Location: 20836 - 21663 (+)
Type: TC
Location: 20836 - 21663 (+)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2450_15
Type: CAZyme
Location: 21795 - 22721 (+)
Type: CAZyme
Location: 21795 - 22721 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.