Cluster: MurphyR_2019_SRR7411253_bin.6_CGC2
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: MurphyR_2019_SRR7411253_bin.6
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411253_bin.6_k141_2360 | MurphyR_2019_SRR7411253_bin.6_k141_2360_88 | 99411 | 100079 | - | 3.A.1.103.5 |
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_2360 | MurphyR_2019_SRR7411253_bin.6_k141_2360_89 | 100202 | 101164 | + | GT81 |
| pfam | MurphyR_2019_SRR7411253_bin.6_k141_2360 | MurphyR_2019_SRR7411253_bin.6_k141_2360_90 | 101039 | 101716 | - | IU_nuc_hydro |
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_2360 | MurphyR_2019_SRR7411253_bin.6_k141_2360_91 | 101773 | 103008 | - | GT4 |
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_2360 | MurphyR_2019_SRR7411253_bin.6_k141_2360_92 | 103030 | 104088 | - | GT2 |
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_2360 | MurphyR_2019_SRR7411253_bin.6_k141_2360_93 | 104097 | 105206 | - | GT2 |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_2360 | MurphyR_2019_SRR7411253_bin.6_k141_2360_94 | 105208 | 105963 | - | 3.A.1.103.1 |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_2360 | MurphyR_2019_SRR7411253_bin.6_k141_2360_95 | 105973 | 106785 | - | 3.A.1.103.4 |
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_2360 | MurphyR_2019_SRR7411253_bin.6_k141_2360_96 | 106943 | 108079 | - | GT2 |
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_2360 | MurphyR_2019_SRR7411253_bin.6_k141_2360_97 | 108275 | 110260 | + | GT2 |
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2360_88
Type: TC
Location: 99411 - 100079 (-)
Type: TC
Location: 99411 - 100079 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2360_89
Type: CAZyme
Location: 100202 - 101164 (+)
Type: CAZyme
Location: 100202 - 101164 (+)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2360_90
Type: pfam
Location: 101039 - 101716 (-)
Type: pfam
Location: 101039 - 101716 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2360_91
Type: CAZyme
Location: 101773 - 103008 (-)
Type: CAZyme
Location: 101773 - 103008 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2360_92
Type: CAZyme
Location: 103030 - 104088 (-)
Type: CAZyme
Location: 103030 - 104088 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2360_93
Type: CAZyme
Location: 104097 - 105206 (-)
Type: CAZyme
Location: 104097 - 105206 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2360_94
Type: TC
Location: 105208 - 105963 (-)
Type: TC
Location: 105208 - 105963 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2360_95
Type: TC
Location: 105973 - 106785 (-)
Type: TC
Location: 105973 - 106785 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2360_96
Type: CAZyme
Location: 106943 - 108079 (-)
Type: CAZyme
Location: 106943 - 108079 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_2360_97
Type: CAZyme
Location: 108275 - 110260 (+)
Type: CAZyme
Location: 108275 - 110260 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7411253_bin.6_k141_2360_91 | vegetarian > omnivore | 2.32471 | 0.02684 |
| MurphyR_2019_SRR7411253_bin.6_k141_2360_91 | vegetarian > vegan | 3.02890 | 0.03557 |
| MurphyR_2019_SRR7411253_bin.6_k141_2360_93 | vegetarian > omnivore | 2.42270 | 0.02684 |
| MurphyR_2019_SRR7411253_bin.6_k141_2360_95 | vegetarian > vegan | 2.65456 | 0.03557 |
| MurphyR_2019_SRR7411253_bin.6_k141_2360_96 | vegetarian > omnivore | 1.37147 | 0.02684 |
| MurphyR_2019_SRR7411253_bin.6_k141_2360_96 | vegetarian > vegan | 2.30056 | 0.03557 |