Cluster: MurphyR_2019_SRR7411253_bin.6_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: MurphyR_2019_SRR7411253_bin.6
- CGC Family ID: CGCFAM_02790
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_5849 | MurphyR_2019_SRR7411253_bin.6_k141_5849_24 | 22492 | 23412 | - | GT101 |
| pfam | MurphyR_2019_SRR7411253_bin.6_k141_5849 | MurphyR_2019_SRR7411253_bin.6_k141_5849_25 | 23409 | 24155 | - | Hexapep | Hexapep_2 |
| pfam | MurphyR_2019_SRR7411253_bin.6_k141_5849 | MurphyR_2019_SRR7411253_bin.6_k141_5849_26 | 24145 | 25413 | - | Wzy_C |
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_5849 | MurphyR_2019_SRR7411253_bin.6_k141_5849_27 | 25413 | 26462 | - | GT2 |
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_5849 | MurphyR_2019_SRR7411253_bin.6_k141_5849_28 | 26462 | 27463 | - | GT32 |
| pfam | MurphyR_2019_SRR7411253_bin.6_k141_5849 | MurphyR_2019_SRR7411253_bin.6_k141_5849_29 | 27481 | 27924 | - | Hexapep | Hexapep_2 |
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_5849 | MurphyR_2019_SRR7411253_bin.6_k141_5849_30 | 28005 | 29075 | - | GT4 |
| CAZyme | MurphyR_2019_SRR7411253_bin.6_k141_5849 | MurphyR_2019_SRR7411253_bin.6_k141_5849_31 | 29068 | 29832 | - | GT26 |
| STP | MurphyR_2019_SRR7411253_bin.6_k141_5849 | MurphyR_2019_SRR7411253_bin.6_k141_5849_32 | 29844 | 31196 | - | AraC_binding |
| pfam | MurphyR_2019_SRR7411253_bin.6_k141_5849 | MurphyR_2019_SRR7411253_bin.6_k141_5849_33 | 31196 | 32935 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| TC | MurphyR_2019_SRR7411253_bin.6_k141_5849 | MurphyR_2019_SRR7411253_bin.6_k141_5849_34 | 32938 | 33699 | - | 9.B.18.1.2 |
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_5849_24
Type: CAZyme
Location: 22492 - 23412 (-)
Type: CAZyme
Location: 22492 - 23412 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_5849_25
Type: pfam
Location: 23409 - 24155 (-)
Type: pfam
Location: 23409 - 24155 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_5849_26
Type: pfam
Location: 24145 - 25413 (-)
Type: pfam
Location: 24145 - 25413 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_5849_27
Type: CAZyme
Location: 25413 - 26462 (-)
Type: CAZyme
Location: 25413 - 26462 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_5849_28
Type: CAZyme
Location: 26462 - 27463 (-)
Type: CAZyme
Location: 26462 - 27463 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_5849_29
Type: pfam
Location: 27481 - 27924 (-)
Type: pfam
Location: 27481 - 27924 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_5849_30
Type: CAZyme
Location: 28005 - 29075 (-)
Type: CAZyme
Location: 28005 - 29075 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_5849_31
Type: CAZyme
Location: 29068 - 29832 (-)
Type: CAZyme
Location: 29068 - 29832 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_5849_32
Type: STP
Location: 29844 - 31196 (-)
Type: STP
Location: 29844 - 31196 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_5849_33
Type: pfam
Location: 31196 - 32935 (-)
Type: pfam
Location: 31196 - 32935 (-)
Gene ID: MurphyR_2019_SRR7411253_bin.6_k141_5849_34
Type: TC
Location: 32938 - 33699 (-)
Type: TC
Location: 32938 - 33699 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.