Cluster: MurphyR_2019_SRR7352085_bin.1_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: MurphyR_2019_SRR7352085_bin.1
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7352085_bin.1_k141_33708 | MurphyR_2019_SRR7352085_bin.1_k141_33708_16 | 18983 | 19906 | - | GT2 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7352085_bin.1_k141_33708 | MurphyR_2019_SRR7352085_bin.1_k141_33708_17 | 19920 | 20414 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MurphyR_2019_SRR7352085_bin.1_k141_33708 | MurphyR_2019_SRR7352085_bin.1_k141_33708_18 | 20411 | 21514 | - | GT4 |
| pfam | MurphyR_2019_SRR7352085_bin.1_k141_33708 | MurphyR_2019_SRR7352085_bin.1_k141_33708_19 | 21762 | 22652 | - | ATPgrasp_TupA |
| CAZyme | MurphyR_2019_SRR7352085_bin.1_k141_33708 | MurphyR_2019_SRR7352085_bin.1_k141_33708_20 | 22649 | 23140 | - | GT1 |
| pfam | MurphyR_2019_SRR7352085_bin.1_k141_33708 | MurphyR_2019_SRR7352085_bin.1_k141_33708_21 | 23153 | 23626 | - | Alg14 |
| pfam | MurphyR_2019_SRR7352085_bin.1_k141_33708 | MurphyR_2019_SRR7352085_bin.1_k141_33708_22 | 23630 | 24889 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| TC | MurphyR_2019_SRR7352085_bin.1_k141_33708 | MurphyR_2019_SRR7352085_bin.1_k141_33708_23 | 24928 | 25689 | - | 9.B.18.1.2 |
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_33708_16
Type: CAZyme
Location: 18983 - 19906 (-)
Type: CAZyme
Location: 18983 - 19906 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_33708_17
Type:
Location: 19920 - 20414 (-)
Type:
Location: 19920 - 20414 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_33708_18
Type: CAZyme
Location: 20411 - 21514 (-)
Type: CAZyme
Location: 20411 - 21514 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_33708_19
Type: pfam
Location: 21762 - 22652 (-)
Type: pfam
Location: 21762 - 22652 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_33708_20
Type: CAZyme
Location: 22649 - 23140 (-)
Type: CAZyme
Location: 22649 - 23140 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_33708_21
Type: pfam
Location: 23153 - 23626 (-)
Type: pfam
Location: 23153 - 23626 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_33708_22
Type: pfam
Location: 23630 - 24889 (-)
Type: pfam
Location: 23630 - 24889 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_33708_23
Type: TC
Location: 24928 - 25689 (-)
Type: TC
Location: 24928 - 25689 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7352085_bin.1_k141_33708_22 | vegan > omnivore | 1.27565 | 0.02258 |