Cluster: MurphyR_2019_SRR7352085_bin.1_CGC14
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7352085_bin.1
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7352085_bin.1_k141_32178 | MurphyR_2019_SRR7352085_bin.1_k141_32178_27 | 33044 | 33838 | - | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7352085_bin.1_k141_32178 | MurphyR_2019_SRR7352085_bin.1_k141_32178_28 | 33831 | 34754 | - | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7352085_bin.1_k141_32178 | MurphyR_2019_SRR7352085_bin.1_k141_32178_29 | 34959 | 35939 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7352085_bin.1_k141_32178 | MurphyR_2019_SRR7352085_bin.1_k141_32178_30 | 36100 | 36882 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MurphyR_2019_SRR7352085_bin.1_k141_32178 | MurphyR_2019_SRR7352085_bin.1_k141_32178_31 | 37141 | 38544 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | MurphyR_2019_SRR7352085_bin.1_k141_32178 | MurphyR_2019_SRR7352085_bin.1_k141_32178_32 | 38726 | 39289 | - | 4.A.1.2.6 |
| peptidase | MurphyR_2019_SRR7352085_bin.1_k141_32178 | MurphyR_2019_SRR7352085_bin.1_k141_32178_33 | 39534 | 40433 | + | S09.UPW |
| NULL(UNKNOWN) | MurphyR_2019_SRR7352085_bin.1_k141_32178 | MurphyR_2019_SRR7352085_bin.1_k141_32178_34 | 40562 | 40903 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MurphyR_2019_SRR7352085_bin.1_k141_32178 | MurphyR_2019_SRR7352085_bin.1_k141_32178_35 | 40974 | 43334 | + | 9.A.8.1.6 |
| TC | MurphyR_2019_SRR7352085_bin.1_k141_32178 | MurphyR_2019_SRR7352085_bin.1_k141_32178_36 | 43458 | 44654 | + | 2.A.1.2.18 |
| CAZyme | MurphyR_2019_SRR7352085_bin.1_k141_32178 | MurphyR_2019_SRR7352085_bin.1_k141_32178_37 | 44809 | 46185 | + | GH13_20 |
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_32178_27
Type: TC
Location: 33044 - 33838 (-)
Type: TC
Location: 33044 - 33838 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_32178_28
Type: TC
Location: 33831 - 34754 (-)
Type: TC
Location: 33831 - 34754 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_32178_29
Type: TC
Location: 34959 - 35939 (-)
Type: TC
Location: 34959 - 35939 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_32178_30
Type:
Location: 36100 - 36882 (-)
Type:
Location: 36100 - 36882 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_32178_31
Type: pfam
Location: 37141 - 38544 (-)
Type: pfam
Location: 37141 - 38544 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_32178_32
Type: TC
Location: 38726 - 39289 (-)
Type: TC
Location: 38726 - 39289 (-)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_32178_33
Type: peptidase
Location: 39534 - 40433 (+)
Type: peptidase
Location: 39534 - 40433 (+)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_32178_34
Type:
Location: 40562 - 40903 (+)
Type:
Location: 40562 - 40903 (+)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_32178_35
Type: TC
Location: 40974 - 43334 (+)
Type: TC
Location: 40974 - 43334 (+)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_32178_36
Type: TC
Location: 43458 - 44654 (+)
Type: TC
Location: 43458 - 44654 (+)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_32178_37
Type: CAZyme
Location: 44809 - 46185 (+)
Type: CAZyme
Location: 44809 - 46185 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.