Cluster: MurphyR_2019_SRR7352085_bin.1_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7352085_bin.1
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7352085_bin.1_k141_18158 | MurphyR_2019_SRR7352085_bin.1_k141_18158_68 | 68142 | 68585 | + | 4.A.6.1.16 |
| pfam | MurphyR_2019_SRR7352085_bin.1_k141_18158 | MurphyR_2019_SRR7352085_bin.1_k141_18158_69 | 68585 | 68866 | + | YajC |
| TC | MurphyR_2019_SRR7352085_bin.1_k141_18158 | MurphyR_2019_SRR7352085_bin.1_k141_18158_70 | 68903 | 69385 | + | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7352085_bin.1_k141_18158 | MurphyR_2019_SRR7352085_bin.1_k141_18158_71 | 69476 | 70276 | + | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7352085_bin.1_k141_18158 | MurphyR_2019_SRR7352085_bin.1_k141_18158_72 | 70266 | 71348 | + | 4.A.6.1.4 |
| TF | MurphyR_2019_SRR7352085_bin.1_k141_18158 | MurphyR_2019_SRR7352085_bin.1_k141_18158_73 | 71534 | 72265 | + | GntR |
| STP | MurphyR_2019_SRR7352085_bin.1_k141_18158 | MurphyR_2019_SRR7352085_bin.1_k141_18158_74 | 72380 | 73546 | + | SIS | SIS |
| CAZyme | MurphyR_2019_SRR7352085_bin.1_k141_18158 | MurphyR_2019_SRR7352085_bin.1_k141_18158_75 | 73664 | 74833 | + | CE9 |
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_18158_68
Type: TC
Location: 68142 - 68585 (+)
Type: TC
Location: 68142 - 68585 (+)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_18158_69
Type: pfam
Location: 68585 - 68866 (+)
Type: pfam
Location: 68585 - 68866 (+)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_18158_70
Type: TC
Location: 68903 - 69385 (+)
Type: TC
Location: 68903 - 69385 (+)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_18158_71
Type: TC
Location: 69476 - 70276 (+)
Type: TC
Location: 69476 - 70276 (+)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_18158_72
Type: TC
Location: 70266 - 71348 (+)
Type: TC
Location: 70266 - 71348 (+)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_18158_73
Type: TF
Location: 71534 - 72265 (+)
Type: TF
Location: 71534 - 72265 (+)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_18158_74
Type: STP
Location: 72380 - 73546 (+)
Type: STP
Location: 72380 - 73546 (+)
Gene ID: MurphyR_2019_SRR7352085_bin.1_k141_18158_75
Type: CAZyme
Location: 73664 - 74833 (+)
Type: CAZyme
Location: 73664 - 74833 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.