Cluster: MurphyR_2019_SRR7352066_bin.2_CGC38
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7352066_bin.2
- CGC Family ID: CGCFAM_01027
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7352066_bin.2_k141_11248 | MurphyR_2019_SRR7352066_bin.2_k141_11248_12 | 10882 | 11508 | - | 9.B.28.1.2 |
| STP | MurphyR_2019_SRR7352066_bin.2_k141_11248 | MurphyR_2019_SRR7352066_bin.2_k141_11248_13 | 11862 | 13157 | + | SBP_bac_1 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_11248 | MurphyR_2019_SRR7352066_bin.2_k141_11248_14 | 13229 | 14128 | + | 3.A.1.1.20 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_11248 | MurphyR_2019_SRR7352066_bin.2_k141_11248_15 | 14141 | 14980 | + | 3.A.1.1.36 |
| CAZyme | MurphyR_2019_SRR7352066_bin.2_k141_11248 | MurphyR_2019_SRR7352066_bin.2_k141_11248_16 | 15046 | 17268 | + | GH36 |
| TF | MurphyR_2019_SRR7352066_bin.2_k141_11248 | MurphyR_2019_SRR7352066_bin.2_k141_11248_17 | 17297 | 18202 | + | HTH_AraC | HTH_AraC |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_11248 | MurphyR_2019_SRR7352066_bin.2_k141_11248_18 | 18301 | 20034 | + | 3.A.1.106.2 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_11248 | MurphyR_2019_SRR7352066_bin.2_k141_11248_19 | 20208 | 20918 | + | 3.A.1.124.6 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_11248 | MurphyR_2019_SRR7352066_bin.2_k141_11248_20 | 20915 | 21679 | + | 3.A.1.124.2 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_11248 | MurphyR_2019_SRR7352066_bin.2_k141_11248_21 | 21680 | 22438 | + | 3.A.1.124.6 |
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_11248_12
Type: TC
Location: 10882 - 11508 (-)
Type: TC
Location: 10882 - 11508 (-)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_11248_13
Type: STP
Location: 11862 - 13157 (+)
Type: STP
Location: 11862 - 13157 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_11248_14
Type: TC
Location: 13229 - 14128 (+)
Type: TC
Location: 13229 - 14128 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_11248_15
Type: TC
Location: 14141 - 14980 (+)
Type: TC
Location: 14141 - 14980 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_11248_16
Type: CAZyme
Location: 15046 - 17268 (+)
Type: CAZyme
Location: 15046 - 17268 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_11248_17
Type: TF
Location: 17297 - 18202 (+)
Type: TF
Location: 17297 - 18202 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_11248_18
Type: TC
Location: 18301 - 20034 (+)
Type: TC
Location: 18301 - 20034 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_11248_19
Type: TC
Location: 20208 - 20918 (+)
Type: TC
Location: 20208 - 20918 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_11248_20
Type: TC
Location: 20915 - 21679 (+)
Type: TC
Location: 20915 - 21679 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_11248_21
Type: TC
Location: 21680 - 22438 (+)
Type: TC
Location: 21680 - 22438 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp002320245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.