Cluster: MurphyR_2019_SRR7352066_bin.2_CGC34
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7352066_bin.2
- CGC Family ID: CGCFAM_01098
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7352066_bin.2_k141_10619 | MurphyR_2019_SRR7352066_bin.2_k141_10619_20 | 20479 | 21789 | + | 3.A.1.1.4 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_10619 | MurphyR_2019_SRR7352066_bin.2_k141_10619_21 | 21838 | 22791 | + | 3.A.1.1.4 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_10619 | MurphyR_2019_SRR7352066_bin.2_k141_10619_22 | 22784 | 23611 | + | 3.A.1.1.4 |
| CAZyme | MurphyR_2019_SRR7352066_bin.2_k141_10619 | MurphyR_2019_SRR7352066_bin.2_k141_10619_23 | 23797 | 26865 | + | GH2 |
| CAZyme | MurphyR_2019_SRR7352066_bin.2_k141_10619 | MurphyR_2019_SRR7352066_bin.2_k141_10619_24 | 26912 | 28936 | + | GH42 |
| pfam | MurphyR_2019_SRR7352066_bin.2_k141_10619 | MurphyR_2019_SRR7352066_bin.2_k141_10619_25 | 29005 | 30288 | - | HIGH_NTase1 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_10619 | MurphyR_2019_SRR7352066_bin.2_k141_10619_26 | 30463 | 31797 | + | 1.A.26.1.2 |
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_10619_20
Type: TC
Location: 20479 - 21789 (+)
Type: TC
Location: 20479 - 21789 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_10619_21
Type: TC
Location: 21838 - 22791 (+)
Type: TC
Location: 21838 - 22791 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_10619_22
Type: TC
Location: 22784 - 23611 (+)
Type: TC
Location: 22784 - 23611 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_10619_23
Type: CAZyme
Location: 23797 - 26865 (+)
Type: CAZyme
Location: 23797 - 26865 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_10619_24
Type: CAZyme
Location: 26912 - 28936 (+)
Type: CAZyme
Location: 26912 - 28936 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_10619_25
Type: pfam
Location: 29005 - 30288 (-)
Type: pfam
Location: 29005 - 30288 (-)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_10619_26
Type: TC
Location: 30463 - 31797 (+)
Type: TC
Location: 30463 - 31797 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp002320245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.