Cluster: MurphyR_2019_SRR7352066_bin.2_CGC22
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7352066_bin.2
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7352066_bin.2_k141_7337 | MurphyR_2019_SRR7352066_bin.2_k141_7337_6 | 6018 | 6371 | - | 2.A.2.3.1 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_7337 | MurphyR_2019_SRR7352066_bin.2_k141_7337_7 | 6800 | 8194 | - | 2.A.2.3.1 |
| CAZyme | MurphyR_2019_SRR7352066_bin.2_k141_7337 | MurphyR_2019_SRR7352066_bin.2_k141_7337_8 | 8217 | 10034 | - | GH2 |
| CAZyme | MurphyR_2019_SRR7352066_bin.2_k141_7337 | MurphyR_2019_SRR7352066_bin.2_k141_7337_9 | 10229 | 11098 | - | CE4 |
| TF | MurphyR_2019_SRR7352066_bin.2_k141_7337 | MurphyR_2019_SRR7352066_bin.2_k141_7337_10 | 11366 | 12130 | + | MarR |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_7337 | MurphyR_2019_SRR7352066_bin.2_k141_7337_11 | 12191 | 12829 | - | 3.A.1.125.2 |
| pfam | MurphyR_2019_SRR7352066_bin.2_k141_7337 | MurphyR_2019_SRR7352066_bin.2_k141_7337_12 | 12843 | 14447 | - | FtsX |
| pfam | MurphyR_2019_SRR7352066_bin.2_k141_7337 | MurphyR_2019_SRR7352066_bin.2_k141_7337_13 | 14765 | 15169 | - | DUF1284 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_7337 | MurphyR_2019_SRR7352066_bin.2_k141_7337_14 | 15160 | 15708 | - | 3.A.1.25.5 |
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7337_6
Type: TC
Location: 6018 - 6371 (-)
Type: TC
Location: 6018 - 6371 (-)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7337_7
Type: TC
Location: 6800 - 8194 (-)
Type: TC
Location: 6800 - 8194 (-)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7337_8
Type: CAZyme
Location: 8217 - 10034 (-)
Type: CAZyme
Location: 8217 - 10034 (-)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7337_9
Type: CAZyme
Location: 10229 - 11098 (-)
Type: CAZyme
Location: 10229 - 11098 (-)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7337_10
Type: TF
Location: 11366 - 12130 (+)
Type: TF
Location: 11366 - 12130 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7337_11
Type: TC
Location: 12191 - 12829 (-)
Type: TC
Location: 12191 - 12829 (-)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7337_12
Type: pfam
Location: 12843 - 14447 (-)
Type: pfam
Location: 12843 - 14447 (-)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7337_13
Type: pfam
Location: 14765 - 15169 (-)
Type: pfam
Location: 14765 - 15169 (-)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7337_14
Type: TC
Location: 15160 - 15708 (-)
Type: TC
Location: 15160 - 15708 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp002320245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.