Cluster: MurphyR_2019_SRR7352066_bin.2_CGC19
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7352066_bin.2
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7352066_bin.2_k141_7066 | MurphyR_2019_SRR7352066_bin.2_k141_7066_2 | 1517 | 2884 | + | 2.A.2.3.5 |
| pfam | MurphyR_2019_SRR7352066_bin.2_k141_7066 | MurphyR_2019_SRR7352066_bin.2_k141_7066_3 | 2911 | 3762 | + | Creatininase |
| CAZyme | MurphyR_2019_SRR7352066_bin.2_k141_7066 | MurphyR_2019_SRR7352066_bin.2_k141_7066_4 | 4019 | 6577 | + | GH3 |
| pfam | MurphyR_2019_SRR7352066_bin.2_k141_7066 | MurphyR_2019_SRR7352066_bin.2_k141_7066_5 | 6597 | 6899 | + | GIY-YIG |
| pfam | MurphyR_2019_SRR7352066_bin.2_k141_7066 | MurphyR_2019_SRR7352066_bin.2_k141_7066_6 | 7019 | 9208 | + | Gly_radical | ATP-cone | NRDD |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_7066 | MurphyR_2019_SRR7352066_bin.2_k141_7066_7 | 9917 | 11707 | + | 8.A.59.2.1 |
| TF | MurphyR_2019_SRR7352066_bin.2_k141_7066 | MurphyR_2019_SRR7352066_bin.2_k141_7066_8 | 11700 | 13271 | + | HTH_AraC |
| STP | MurphyR_2019_SRR7352066_bin.2_k141_7066 | MurphyR_2019_SRR7352066_bin.2_k141_7066_9 | 13478 | 14755 | + | SBP_bac_1 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_7066 | MurphyR_2019_SRR7352066_bin.2_k141_7066_10 | 14824 | 15672 | + | 3.A.1.1.42 |
| TC | MurphyR_2019_SRR7352066_bin.2_k141_7066 | MurphyR_2019_SRR7352066_bin.2_k141_7066_11 | 15672 | 16505 | + | 3.A.1.1.28 |
| CAZyme | MurphyR_2019_SRR7352066_bin.2_k141_7066 | MurphyR_2019_SRR7352066_bin.2_k141_7066_12 | 16524 | 17534 | + | GH29 |
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7066_2
Type: TC
Location: 1517 - 2884 (+)
Type: TC
Location: 1517 - 2884 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7066_3
Type: pfam
Location: 2911 - 3762 (+)
Type: pfam
Location: 2911 - 3762 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7066_4
Type: CAZyme
Location: 4019 - 6577 (+)
Type: CAZyme
Location: 4019 - 6577 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7066_5
Type: pfam
Location: 6597 - 6899 (+)
Type: pfam
Location: 6597 - 6899 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7066_6
Type: pfam
Location: 7019 - 9208 (+)
Type: pfam
Location: 7019 - 9208 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7066_7
Type: TC
Location: 9917 - 11707 (+)
Type: TC
Location: 9917 - 11707 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7066_8
Type: TF
Location: 11700 - 13271 (+)
Type: TF
Location: 11700 - 13271 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7066_9
Type: STP
Location: 13478 - 14755 (+)
Type: STP
Location: 13478 - 14755 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7066_10
Type: TC
Location: 14824 - 15672 (+)
Type: TC
Location: 14824 - 15672 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7066_11
Type: TC
Location: 15672 - 16505 (+)
Type: TC
Location: 15672 - 16505 (+)
Gene ID: MurphyR_2019_SRR7352066_bin.2_k141_7066_12
Type: CAZyme
Location: 16524 - 17534 (+)
Type: CAZyme
Location: 16524 - 17534 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp002320245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.