Cluster: MurphyR_2019_SRR7352046_bin.8_CGC20
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7352046_bin.8
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7352046_bin.8_k141_44007 | MurphyR_2019_SRR7352046_bin.8_k141_44007_22 | 21675 | 22118 | + | 4.A.6.1.16 |
| pfam | MurphyR_2019_SRR7352046_bin.8_k141_44007 | MurphyR_2019_SRR7352046_bin.8_k141_44007_23 | 22118 | 22399 | + | YajC |
| TC | MurphyR_2019_SRR7352046_bin.8_k141_44007 | MurphyR_2019_SRR7352046_bin.8_k141_44007_24 | 22436 | 22918 | + | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7352046_bin.8_k141_44007 | MurphyR_2019_SRR7352046_bin.8_k141_44007_25 | 23009 | 23809 | + | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7352046_bin.8_k141_44007 | MurphyR_2019_SRR7352046_bin.8_k141_44007_26 | 23799 | 24881 | + | 4.A.6.1.4 |
| TF | MurphyR_2019_SRR7352046_bin.8_k141_44007 | MurphyR_2019_SRR7352046_bin.8_k141_44007_27 | 25066 | 25797 | + | GntR |
| STP | MurphyR_2019_SRR7352046_bin.8_k141_44007 | MurphyR_2019_SRR7352046_bin.8_k141_44007_28 | 25912 | 27078 | + | SIS | SIS |
| CAZyme | MurphyR_2019_SRR7352046_bin.8_k141_44007 | MurphyR_2019_SRR7352046_bin.8_k141_44007_29 | 27197 | 28366 | + | CE9 |
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_44007_22
Type: TC
Location: 21675 - 22118 (+)
Type: TC
Location: 21675 - 22118 (+)
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_44007_23
Type: pfam
Location: 22118 - 22399 (+)
Type: pfam
Location: 22118 - 22399 (+)
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_44007_24
Type: TC
Location: 22436 - 22918 (+)
Type: TC
Location: 22436 - 22918 (+)
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_44007_25
Type: TC
Location: 23009 - 23809 (+)
Type: TC
Location: 23009 - 23809 (+)
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_44007_26
Type: TC
Location: 23799 - 24881 (+)
Type: TC
Location: 23799 - 24881 (+)
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_44007_27
Type: TF
Location: 25066 - 25797 (+)
Type: TF
Location: 25066 - 25797 (+)
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_44007_28
Type: STP
Location: 25912 - 27078 (+)
Type: STP
Location: 25912 - 27078 (+)
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_44007_29
Type: CAZyme
Location: 27197 - 28366 (+)
Type: CAZyme
Location: 27197 - 28366 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.