Cluster: MurphyR_2019_SRR7352046_bin.8_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7352046_bin.8
- CGC Family ID: CGCFAM_00343
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7352046_bin.8_k141_22041 | MurphyR_2019_SRR7352046_bin.8_k141_22041_3 | 1935 | 2267 | - | 4.A.3.2.3 |
| TC | MurphyR_2019_SRR7352046_bin.8_k141_22041 | MurphyR_2019_SRR7352046_bin.8_k141_22041_4 | 2277 | 2579 | - | 4.A.3.2.9 |
| TC | MurphyR_2019_SRR7352046_bin.8_k141_22041 | MurphyR_2019_SRR7352046_bin.8_k141_22041_5 | 2738 | 3490 | - | 4.A.3.2.9 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7352046_bin.8_k141_22041 | MurphyR_2019_SRR7352046_bin.8_k141_22041_6 | 3487 | 4080 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MurphyR_2019_SRR7352046_bin.8_k141_22041 | MurphyR_2019_SRR7352046_bin.8_k141_22041_7 | 4201 | 5601 | - | GH1 |
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_22041_3
Type: TC
Location: 1935 - 2267 (-)
Type: TC
Location: 1935 - 2267 (-)
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_22041_4
Type: TC
Location: 2277 - 2579 (-)
Type: TC
Location: 2277 - 2579 (-)
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_22041_5
Type: TC
Location: 2738 - 3490 (-)
Type: TC
Location: 2738 - 3490 (-)
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_22041_6
Type:
Location: 3487 - 4080 (-)
Type:
Location: 3487 - 4080 (-)
Gene ID: MurphyR_2019_SRR7352046_bin.8_k141_22041_7
Type: CAZyme
Location: 4201 - 5601 (-)
Type: CAZyme
Location: 4201 - 5601 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.