Cluster: MurphyR_2019_SRR7351979_bin.5_CGC16
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7351979_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351979_bin.5_k141_54652 | MurphyR_2019_SRR7351979_bin.5_k141_54652_6 | 5540 | 7234 | + | 4.A.3.1.1 |
| STP | MurphyR_2019_SRR7351979_bin.5_k141_54652 | MurphyR_2019_SRR7351979_bin.5_k141_54652_7 | 7397 | 7726 | + | DeoRC |
| pfam | MurphyR_2019_SRR7351979_bin.5_k141_54652 | MurphyR_2019_SRR7351979_bin.5_k141_54652_8 | 7775 | 9007 | - | Fic |
| CAZyme | MurphyR_2019_SRR7351979_bin.5_k141_54652 | MurphyR_2019_SRR7351979_bin.5_k141_54652_9 | 9371 | 10792 | - | GH1 |
| TC | MurphyR_2019_SRR7351979_bin.5_k141_54652 | MurphyR_2019_SRR7351979_bin.5_k141_54652_10 | 10868 | 12646 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351979_bin.5_k141_54652 | MurphyR_2019_SRR7351979_bin.5_k141_54652_11 | 12921 | 13931 | + | LacI |
| CAZyme | MurphyR_2019_SRR7351979_bin.5_k141_54652 | MurphyR_2019_SRR7351979_bin.5_k141_54652_12 | 14186 | 15625 | - | GH1 |
| TC | MurphyR_2019_SRR7351979_bin.5_k141_54652 | MurphyR_2019_SRR7351979_bin.5_k141_54652_13 | 15692 | 17467 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351979_bin.5_k141_54652 | MurphyR_2019_SRR7351979_bin.5_k141_54652_14 | 17825 | 18829 | + | LacI |
| TC | MurphyR_2019_SRR7351979_bin.5_k141_54652 | MurphyR_2019_SRR7351979_bin.5_k141_54652_15 | 19044 | 19382 | + | 4.A.3.1.2 |
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_54652_6
Type: TC
Location: 5540 - 7234 (+)
Type: TC
Location: 5540 - 7234 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_54652_7
Type: STP
Location: 7397 - 7726 (+)
Type: STP
Location: 7397 - 7726 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_54652_8
Type: pfam
Location: 7775 - 9007 (-)
Type: pfam
Location: 7775 - 9007 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_54652_9
Type: CAZyme
Location: 9371 - 10792 (-)
Type: CAZyme
Location: 9371 - 10792 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_54652_10
Type: TC
Location: 10868 - 12646 (-)
Type: TC
Location: 10868 - 12646 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_54652_11
Type: TF
Location: 12921 - 13931 (+)
Type: TF
Location: 12921 - 13931 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_54652_12
Type: CAZyme
Location: 14186 - 15625 (-)
Type: CAZyme
Location: 14186 - 15625 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_54652_13
Type: TC
Location: 15692 - 17467 (-)
Type: TC
Location: 15692 - 17467 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_54652_14
Type: TF
Location: 17825 - 18829 (+)
Type: TF
Location: 17825 - 18829 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_54652_15
Type: TC
Location: 19044 - 19382 (+)
Type: TC
Location: 19044 - 19382 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.