Cluster: MurphyR_2019_SRR7351979_bin.5_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: MurphyR_2019_SRR7351979_bin.5
- CGC Family ID: CGCFAM_00008
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351979_bin.5_k141_47122 | MurphyR_2019_SRR7351979_bin.5_k141_47122_128 | 132611 | 133378 | - | 3.A.1.103.1 |
| TC | MurphyR_2019_SRR7351979_bin.5_k141_47122 | MurphyR_2019_SRR7351979_bin.5_k141_47122_129 | 133390 | 134235 | - | 3.A.1.103.6 |
| CAZyme | MurphyR_2019_SRR7351979_bin.5_k141_47122 | MurphyR_2019_SRR7351979_bin.5_k141_47122_130 | 134383 | 135336 | + | GT2 |
| pfam | MurphyR_2019_SRR7351979_bin.5_k141_47122 | MurphyR_2019_SRR7351979_bin.5_k141_47122_131 | 135343 | 136431 | + | Acyl_transf_3 |
| CAZyme | MurphyR_2019_SRR7351979_bin.5_k141_47122 | MurphyR_2019_SRR7351979_bin.5_k141_47122_132 | 136514 | 137653 | - | GT2 |
| pfam | MurphyR_2019_SRR7351979_bin.5_k141_47122 | MurphyR_2019_SRR7351979_bin.5_k141_47122_133 | 137736 | 139739 | - | DUF6541 |
| pfam | MurphyR_2019_SRR7351979_bin.5_k141_47122 | MurphyR_2019_SRR7351979_bin.5_k141_47122_134 | 139907 | 140269 | - | DUF2304 |
| CAZyme | MurphyR_2019_SRR7351979_bin.5_k141_47122 | MurphyR_2019_SRR7351979_bin.5_k141_47122_135 | 140275 | 140967 | - | GT2 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351979_bin.5_k141_47122 | MurphyR_2019_SRR7351979_bin.5_k141_47122_136 | 141175 | 142416 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351979_bin.5_k141_47122 | MurphyR_2019_SRR7351979_bin.5_k141_47122_137 | 142428 | 143396 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MurphyR_2019_SRR7351979_bin.5_k141_47122 | MurphyR_2019_SRR7351979_bin.5_k141_47122_138 | 143881 | 144873 | - | GT2 |
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_47122_128
Type: TC
Location: 132611 - 133378 (-)
Type: TC
Location: 132611 - 133378 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_47122_129
Type: TC
Location: 133390 - 134235 (-)
Type: TC
Location: 133390 - 134235 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_47122_130
Type: CAZyme
Location: 134383 - 135336 (+)
Type: CAZyme
Location: 134383 - 135336 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_47122_131
Type: pfam
Location: 135343 - 136431 (+)
Type: pfam
Location: 135343 - 136431 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_47122_132
Type: CAZyme
Location: 136514 - 137653 (-)
Type: CAZyme
Location: 136514 - 137653 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_47122_133
Type: pfam
Location: 137736 - 139739 (-)
Type: pfam
Location: 137736 - 139739 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_47122_134
Type: pfam
Location: 139907 - 140269 (-)
Type: pfam
Location: 139907 - 140269 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_47122_135
Type: CAZyme
Location: 140275 - 140967 (-)
Type: CAZyme
Location: 140275 - 140967 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_47122_136
Type:
Location: 141175 - 142416 (+)
Type:
Location: 141175 - 142416 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_47122_137
Type:
Location: 142428 - 143396 (+)
Type:
Location: 142428 - 143396 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_47122_138
Type: CAZyme
Location: 143881 - 144873 (-)
Type: CAZyme
Location: 143881 - 144873 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.