Cluster: MurphyR_2019_SRR7351979_bin.5_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351979_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351979_bin.5_k141_36181 | MurphyR_2019_SRR7351979_bin.5_k141_36181_33 | 35923 | 36717 | - | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7351979_bin.5_k141_36181 | MurphyR_2019_SRR7351979_bin.5_k141_36181_34 | 36710 | 37633 | - | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7351979_bin.5_k141_36181 | MurphyR_2019_SRR7351979_bin.5_k141_36181_35 | 37838 | 38818 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351979_bin.5_k141_36181 | MurphyR_2019_SRR7351979_bin.5_k141_36181_36 | 38979 | 39764 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MurphyR_2019_SRR7351979_bin.5_k141_36181 | MurphyR_2019_SRR7351979_bin.5_k141_36181_37 | 40014 | 41417 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | MurphyR_2019_SRR7351979_bin.5_k141_36181 | MurphyR_2019_SRR7351979_bin.5_k141_36181_38 | 41599 | 42162 | - | 4.A.1.2.6 |
| peptidase | MurphyR_2019_SRR7351979_bin.5_k141_36181 | MurphyR_2019_SRR7351979_bin.5_k141_36181_39 | 42407 | 43306 | + | S09.UPW |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351979_bin.5_k141_36181 | MurphyR_2019_SRR7351979_bin.5_k141_36181_40 | 43354 | 43674 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MurphyR_2019_SRR7351979_bin.5_k141_36181 | MurphyR_2019_SRR7351979_bin.5_k141_36181_41 | 43796 | 46156 | + | 9.A.8.1.6 |
| TC | MurphyR_2019_SRR7351979_bin.5_k141_36181 | MurphyR_2019_SRR7351979_bin.5_k141_36181_42 | 46278 | 47474 | + | 2.A.1.2.18 |
| CAZyme | MurphyR_2019_SRR7351979_bin.5_k141_36181 | MurphyR_2019_SRR7351979_bin.5_k141_36181_43 | 47628 | 49004 | + | GH13_20 |
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_36181_33
Type: TC
Location: 35923 - 36717 (-)
Type: TC
Location: 35923 - 36717 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_36181_34
Type: TC
Location: 36710 - 37633 (-)
Type: TC
Location: 36710 - 37633 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_36181_35
Type: TC
Location: 37838 - 38818 (-)
Type: TC
Location: 37838 - 38818 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_36181_36
Type:
Location: 38979 - 39764 (-)
Type:
Location: 38979 - 39764 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_36181_37
Type: pfam
Location: 40014 - 41417 (-)
Type: pfam
Location: 40014 - 41417 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_36181_38
Type: TC
Location: 41599 - 42162 (-)
Type: TC
Location: 41599 - 42162 (-)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_36181_39
Type: peptidase
Location: 42407 - 43306 (+)
Type: peptidase
Location: 42407 - 43306 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_36181_40
Type:
Location: 43354 - 43674 (+)
Type:
Location: 43354 - 43674 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_36181_41
Type: TC
Location: 43796 - 46156 (+)
Type: TC
Location: 43796 - 46156 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_36181_42
Type: TC
Location: 46278 - 47474 (+)
Type: TC
Location: 46278 - 47474 (+)
Gene ID: MurphyR_2019_SRR7351979_bin.5_k141_36181_43
Type: CAZyme
Location: 47628 - 49004 (+)
Type: CAZyme
Location: 47628 - 49004 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.