Cluster: MurphyR_2019_SRR7351944_bin.2_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351944_bin.2
- CGC Family ID: CGCFAM_00019
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351944_bin.2_k141_5428 | MurphyR_2019_SRR7351944_bin.2_k141_5428_9 | 12455 | 14797 | - | 3.A.3.5.15 |
| STP | MurphyR_2019_SRR7351944_bin.2_k141_5428 | MurphyR_2019_SRR7351944_bin.2_k141_5428_10 | 15211 | 17295 | - | Pkinase |
| STP | MurphyR_2019_SRR7351944_bin.2_k141_5428 | MurphyR_2019_SRR7351944_bin.2_k141_5428_11 | 17467 | 18429 | - | FHA |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_5428 | MurphyR_2019_SRR7351944_bin.2_k141_5428_12 | 18937 | 21114 | + | 1.I.1.1.3 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351944_bin.2_k141_5428 | MurphyR_2019_SRR7351944_bin.2_k141_5428_13 | 21130 | 21420 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_5428 | MurphyR_2019_SRR7351944_bin.2_k141_5428_14 | 21591 | 22103 | + | 4.A.1.2.2 |
| pfam | MurphyR_2019_SRR7351944_bin.2_k141_5428 | MurphyR_2019_SRR7351944_bin.2_k141_5428_15 | 22110 | 22976 | + | PRD | PRD | CAT_RBD |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_5428 | MurphyR_2019_SRR7351944_bin.2_k141_5428_16 | 23076 | 24692 | + | 4.A.1.1.3 |
| CAZyme | MurphyR_2019_SRR7351944_bin.2_k141_5428 | MurphyR_2019_SRR7351944_bin.2_k141_5428_17 | 24696 | 26078 | + | GH4 |
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_5428_9
Type: TC
Location: 12455 - 14797 (-)
Type: TC
Location: 12455 - 14797 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_5428_10
Type: STP
Location: 15211 - 17295 (-)
Type: STP
Location: 15211 - 17295 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_5428_11
Type: STP
Location: 17467 - 18429 (-)
Type: STP
Location: 17467 - 18429 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_5428_12
Type: TC
Location: 18937 - 21114 (+)
Type: TC
Location: 18937 - 21114 (+)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_5428_13
Type:
Location: 21130 - 21420 (-)
Type:
Location: 21130 - 21420 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_5428_14
Type: TC
Location: 21591 - 22103 (+)
Type: TC
Location: 21591 - 22103 (+)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_5428_15
Type: pfam
Location: 22110 - 22976 (+)
Type: pfam
Location: 22110 - 22976 (+)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_5428_16
Type: TC
Location: 23076 - 24692 (+)
Type: TC
Location: 23076 - 24692 (+)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_5428_17
Type: CAZyme
Location: 24696 - 26078 (+)
Type: CAZyme
Location: 24696 - 26078 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.