Cluster: MurphyR_2019_SRR7351944_bin.2_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351944_bin.2
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_54 | 59020 | 60378 | - | 2.A.33.1.1 |
| pfam | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_55 | 60646 | 61569 | - | DHH | DHHA2 |
| STP | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_56 | 61738 | 62691 | - | Glucokinase |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_57 | 62933 | 63265 | - | 4.A.3.2.3 |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_58 | 63275 | 63577 | - | 4.A.3.2.9 |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_59 | 63735 | 65078 | - | 4.A.3.2.9 |
| CAZyme | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_60 | 65199 | 66599 | - | GH1 |
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_54
Type: TC
Location: 59020 - 60378 (-)
Type: TC
Location: 59020 - 60378 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_55
Type: pfam
Location: 60646 - 61569 (-)
Type: pfam
Location: 60646 - 61569 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_56
Type: STP
Location: 61738 - 62691 (-)
Type: STP
Location: 61738 - 62691 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_57
Type: TC
Location: 62933 - 63265 (-)
Type: TC
Location: 62933 - 63265 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_58
Type: TC
Location: 63275 - 63577 (-)
Type: TC
Location: 63275 - 63577 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_59
Type: TC
Location: 63735 - 65078 (-)
Type: TC
Location: 63735 - 65078 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_60
Type: CAZyme
Location: 65199 - 66599 (-)
Type: CAZyme
Location: 65199 - 66599 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7351944_bin.2_k141_16536_58 | vegan > omnivore | 1.00595 | 0.00701 |