Cluster: MurphyR_2019_SRR7351944_bin.2_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351944_bin.2
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_24 | 28748 | 29917 | - | CE9 |
| STP | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_25 | 30035 | 31201 | - | SIS | SIS |
| TF | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_26 | 31316 | 32047 | - | GntR |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_27 | 32233 | 33315 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_28 | 33305 | 34105 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_29 | 34196 | 34678 | - | 4.A.6.1.4 |
| pfam | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_30 | 34715 | 34996 | - | YajC |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_31 | 34996 | 35439 | - | 4.A.6.1.16 |
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_24
Type: CAZyme
Location: 28748 - 29917 (-)
Type: CAZyme
Location: 28748 - 29917 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_25
Type: STP
Location: 30035 - 31201 (-)
Type: STP
Location: 30035 - 31201 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_26
Type: TF
Location: 31316 - 32047 (-)
Type: TF
Location: 31316 - 32047 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_27
Type: TC
Location: 32233 - 33315 (-)
Type: TC
Location: 32233 - 33315 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_28
Type: TC
Location: 33305 - 34105 (-)
Type: TC
Location: 33305 - 34105 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_29
Type: TC
Location: 34196 - 34678 (-)
Type: TC
Location: 34196 - 34678 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_30
Type: pfam
Location: 34715 - 34996 (-)
Type: pfam
Location: 34715 - 34996 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_31
Type: TC
Location: 34996 - 35439 (-)
Type: TC
Location: 34996 - 35439 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.