Cluster: MurphyR_2019_SRR7351944_bin.2_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MurphyR_2019_SRR7351944_bin.2
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_2 | 621 | 959 | - | 4.A.3.1.2 |
| TF | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_3 | 1174 | 2178 | - | LacI |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_4 | 2536 | 4299 | + | 4.A.3.1.1 |
| CAZyme | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_5 | 4366 | 5805 | + | GH1 |
| TF | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_6 | 6082 | 7119 | - | LacI |
| CAZyme | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_7 | 7461 | 8903 | + | GH1 |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_8 | 9080 | 10840 | + | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_9 | 11178 | 12188 | - | LacI |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_10 | 12465 | 14243 | + | 4.A.3.1.1 |
| CAZyme | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_11 | 14319 | 15740 | + | GH1 |
| pfam | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_12 | 16109 | 17341 | + | Fic |
| STP | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_13 | 17338 | 17718 | - | DeoRC |
| TC | MurphyR_2019_SRR7351944_bin.2_k141_16536 | MurphyR_2019_SRR7351944_bin.2_k141_16536_14 | 17881 | 19575 | - | 4.A.3.1.1 |
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_2
Type: TC
Location: 621 - 959 (-)
Type: TC
Location: 621 - 959 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_3
Type: TF
Location: 1174 - 2178 (-)
Type: TF
Location: 1174 - 2178 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_4
Type: TC
Location: 2536 - 4299 (+)
Type: TC
Location: 2536 - 4299 (+)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_5
Type: CAZyme
Location: 4366 - 5805 (+)
Type: CAZyme
Location: 4366 - 5805 (+)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_6
Type: TF
Location: 6082 - 7119 (-)
Type: TF
Location: 6082 - 7119 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_7
Type: CAZyme
Location: 7461 - 8903 (+)
Type: CAZyme
Location: 7461 - 8903 (+)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_8
Type: TC
Location: 9080 - 10840 (+)
Type: TC
Location: 9080 - 10840 (+)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_9
Type: TF
Location: 11178 - 12188 (-)
Type: TF
Location: 11178 - 12188 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_10
Type: TC
Location: 12465 - 14243 (+)
Type: TC
Location: 12465 - 14243 (+)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_11
Type: CAZyme
Location: 14319 - 15740 (+)
Type: CAZyme
Location: 14319 - 15740 (+)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_12
Type: pfam
Location: 16109 - 17341 (+)
Type: pfam
Location: 16109 - 17341 (+)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_13
Type: STP
Location: 17338 - 17718 (-)
Type: STP
Location: 17338 - 17718 (-)
Gene ID: MurphyR_2019_SRR7351944_bin.2_k141_16536_14
Type: TC
Location: 17881 - 19575 (-)
Type: TC
Location: 17881 - 19575 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7351944_bin.2_k141_16536_6 | vegetarian > omnivore | 1.02782 | 0.02241 |