Cluster: MurphyR_2019_SRR7351930_bin.14_CGC10
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: MurphyR_2019_SRR7351930_bin.14
- CGC Family ID: CGCFAM_01159
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_7 | 4601 | 6409 | + | GH154 |
| pfam | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_8 | 6564 | 6995 | + | EIIA-man |
| TC | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_9 | 7045 | 7533 | + | 4.A.6.1.3 |
| TC | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_10 | 7604 | 8506 | + | 4.A.6.1.22 |
| TC | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_11 | 8499 | 9362 | + | 4.A.6.1.19 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_12 | 9442 | 10095 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_13 | 10076 | 11227 | + | GH88 |
| pfam | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_14 | 11403 | 12167 | + | CN_hydrolase |
| CAZyme | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_15 | 12167 | 13798 | + | CBM91 | GH43_11 |
| pfam | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_16 | 13809 | 14666 | + | DUF7402 |
| CAZyme | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_17 | 14685 | 15908 | + | GH28 |
| CAZyme | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_18 | 15917 | 17626 | + | GH154 |
| TC | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_19 | 17879 | 18688 | - | 3.A.1.15.3 |
| TC | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_20 | 18681 | 19244 | - | 3.A.1.15.11 |
| pfam | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_21 | 19265 | 20008 | - | Sulfatase |
| pfam | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_22 | 19948 | 21312 | - | Sulfatase |
| TC | MurphyR_2019_SRR7351930_bin.14_k141_27193 | MurphyR_2019_SRR7351930_bin.14_k141_27193_23 | 21325 | 22095 | - | 3.A.1.15.11 |
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_7
Type: CAZyme
Location: 4601 - 6409 (+)
Type: CAZyme
Location: 4601 - 6409 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_8
Type: pfam
Location: 6564 - 6995 (+)
Type: pfam
Location: 6564 - 6995 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_9
Type: TC
Location: 7045 - 7533 (+)
Type: TC
Location: 7045 - 7533 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_10
Type: TC
Location: 7604 - 8506 (+)
Type: TC
Location: 7604 - 8506 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_11
Type: TC
Location: 8499 - 9362 (+)
Type: TC
Location: 8499 - 9362 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_12
Type:
Location: 9442 - 10095 (+)
Type:
Location: 9442 - 10095 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_13
Type: CAZyme
Location: 10076 - 11227 (+)
Type: CAZyme
Location: 10076 - 11227 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_14
Type: pfam
Location: 11403 - 12167 (+)
Type: pfam
Location: 11403 - 12167 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_15
Type: CAZyme
Location: 12167 - 13798 (+)
Type: CAZyme
Location: 12167 - 13798 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_16
Type: pfam
Location: 13809 - 14666 (+)
Type: pfam
Location: 13809 - 14666 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_17
Type: CAZyme
Location: 14685 - 15908 (+)
Type: CAZyme
Location: 14685 - 15908 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_18
Type: CAZyme
Location: 15917 - 17626 (+)
Type: CAZyme
Location: 15917 - 17626 (+)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_19
Type: TC
Location: 17879 - 18688 (-)
Type: TC
Location: 17879 - 18688 (-)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_20
Type: TC
Location: 18681 - 19244 (-)
Type: TC
Location: 18681 - 19244 (-)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_21
Type: pfam
Location: 19265 - 20008 (-)
Type: pfam
Location: 19265 - 20008 (-)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_22
Type: pfam
Location: 19948 - 21312 (-)
Type: pfam
Location: 19948 - 21312 (-)
Gene ID: MurphyR_2019_SRR7351930_bin.14_k141_27193_23
Type: TC
Location: 21325 - 22095 (-)
Type: TC
Location: 21325 - 22095 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.