Cluster: MurphyR_2019_SRR7351898_bin.5_CGC2
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351898_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351898_bin.5_k141_2317 | MurphyR_2019_SRR7351898_bin.5_k141_2317_57 | 59374 | 61107 | - | GH13_30 |
| STP | MurphyR_2019_SRR7351898_bin.5_k141_2317 | MurphyR_2019_SRR7351898_bin.5_k141_2317_58 | 61879 | 62625 | - | STAS |
| STP | MurphyR_2019_SRR7351898_bin.5_k141_2317 | MurphyR_2019_SRR7351898_bin.5_k141_2317_59 | 62704 | 65049 | - | GAF | SpoIIE |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_2317 | MurphyR_2019_SRR7351898_bin.5_k141_2317_60 | 65790 | 66818 | - | 3.A.1.5.36 |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_2317 | MurphyR_2019_SRR7351898_bin.5_k141_2317_61 | 66819 | 67910 | - | 3.A.1.5.34 |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_2317 | MurphyR_2019_SRR7351898_bin.5_k141_2317_62 | 67913 | 68848 | - | 3.A.1.5.11 |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_2317 | MurphyR_2019_SRR7351898_bin.5_k141_2317_63 | 68863 | 69900 | - | 3.A.1.5.37 |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_2317 | MurphyR_2019_SRR7351898_bin.5_k141_2317_64 | 70057 | 71733 | - | 3.A.1.5.35 |
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_2317_57
Type: CAZyme
Location: 59374 - 61107 (-)
Type: CAZyme
Location: 59374 - 61107 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_2317_58
Type: STP
Location: 61879 - 62625 (-)
Type: STP
Location: 61879 - 62625 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_2317_59
Type: STP
Location: 62704 - 65049 (-)
Type: STP
Location: 62704 - 65049 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_2317_60
Type: TC
Location: 65790 - 66818 (-)
Type: TC
Location: 65790 - 66818 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_2317_61
Type: TC
Location: 66819 - 67910 (-)
Type: TC
Location: 66819 - 67910 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_2317_62
Type: TC
Location: 67913 - 68848 (-)
Type: TC
Location: 67913 - 68848 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_2317_63
Type: TC
Location: 68863 - 69900 (-)
Type: TC
Location: 68863 - 69900 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_2317_64
Type: TC
Location: 70057 - 71733 (-)
Type: TC
Location: 70057 - 71733 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.