Cluster: MurphyR_2019_SRR7351898_bin.5_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351898_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351898_bin.5_k141_8842 | MurphyR_2019_SRR7351898_bin.5_k141_8842_59 | 62213 | 62656 | + | 4.A.6.1.16 |
| pfam | MurphyR_2019_SRR7351898_bin.5_k141_8842 | MurphyR_2019_SRR7351898_bin.5_k141_8842_60 | 62656 | 62937 | + | YajC |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_8842 | MurphyR_2019_SRR7351898_bin.5_k141_8842_61 | 62974 | 63456 | + | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_8842 | MurphyR_2019_SRR7351898_bin.5_k141_8842_62 | 63547 | 64347 | + | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_8842 | MurphyR_2019_SRR7351898_bin.5_k141_8842_63 | 64337 | 65419 | + | 4.A.6.1.4 |
| TF | MurphyR_2019_SRR7351898_bin.5_k141_8842 | MurphyR_2019_SRR7351898_bin.5_k141_8842_64 | 65605 | 66336 | + | GntR |
| STP | MurphyR_2019_SRR7351898_bin.5_k141_8842 | MurphyR_2019_SRR7351898_bin.5_k141_8842_65 | 66451 | 67617 | + | SIS | SIS |
| CAZyme | MurphyR_2019_SRR7351898_bin.5_k141_8842 | MurphyR_2019_SRR7351898_bin.5_k141_8842_66 | 67735 | 68904 | + | CE9 |
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_8842_59
Type: TC
Location: 62213 - 62656 (+)
Type: TC
Location: 62213 - 62656 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_8842_60
Type: pfam
Location: 62656 - 62937 (+)
Type: pfam
Location: 62656 - 62937 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_8842_61
Type: TC
Location: 62974 - 63456 (+)
Type: TC
Location: 62974 - 63456 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_8842_62
Type: TC
Location: 63547 - 64347 (+)
Type: TC
Location: 63547 - 64347 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_8842_63
Type: TC
Location: 64337 - 65419 (+)
Type: TC
Location: 64337 - 65419 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_8842_64
Type: TF
Location: 65605 - 66336 (+)
Type: TF
Location: 65605 - 66336 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_8842_65
Type: STP
Location: 66451 - 67617 (+)
Type: STP
Location: 66451 - 67617 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_8842_66
Type: CAZyme
Location: 67735 - 68904 (+)
Type: CAZyme
Location: 67735 - 68904 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.