Cluster: MurphyR_2019_SRR7351898_bin.5_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MurphyR_2019_SRR7351898_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_5 | 4903 | 6597 | + | 4.A.3.1.1 |
| STP | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_6 | 6760 | 7098 | + | DeoRC |
| pfam | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_7 | 7136 | 8368 | - | Fic |
| CAZyme | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_8 | 8737 | 10158 | - | GH1 |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_9 | 10235 | 12013 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_10 | 12289 | 13299 | + | LacI |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_11 | 13557 | 15317 | - | 4.A.3.1.1 |
| CAZyme | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_12 | 15494 | 16936 | - | GH1 |
| TF | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_13 | 17278 | 18315 | + | LacI |
| CAZyme | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_14 | 18578 | 20017 | - | GH1 |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_15 | 20084 | 21859 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_16 | 22187 | 23221 | + | LacI |
| TC | MurphyR_2019_SRR7351898_bin.5_k141_5634 | MurphyR_2019_SRR7351898_bin.5_k141_5634_17 | 23436 | 23774 | + | 4.A.3.1.2 |
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_5
Type: TC
Location: 4903 - 6597 (+)
Type: TC
Location: 4903 - 6597 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_6
Type: STP
Location: 6760 - 7098 (+)
Type: STP
Location: 6760 - 7098 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_7
Type: pfam
Location: 7136 - 8368 (-)
Type: pfam
Location: 7136 - 8368 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_8
Type: CAZyme
Location: 8737 - 10158 (-)
Type: CAZyme
Location: 8737 - 10158 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_9
Type: TC
Location: 10235 - 12013 (-)
Type: TC
Location: 10235 - 12013 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_10
Type: TF
Location: 12289 - 13299 (+)
Type: TF
Location: 12289 - 13299 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_11
Type: TC
Location: 13557 - 15317 (-)
Type: TC
Location: 13557 - 15317 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_12
Type: CAZyme
Location: 15494 - 16936 (-)
Type: CAZyme
Location: 15494 - 16936 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_13
Type: TF
Location: 17278 - 18315 (+)
Type: TF
Location: 17278 - 18315 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_14
Type: CAZyme
Location: 18578 - 20017 (-)
Type: CAZyme
Location: 18578 - 20017 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_15
Type: TC
Location: 20084 - 21859 (-)
Type: TC
Location: 20084 - 21859 (-)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_16
Type: TF
Location: 22187 - 23221 (+)
Type: TF
Location: 22187 - 23221 (+)
Gene ID: MurphyR_2019_SRR7351898_bin.5_k141_5634_17
Type: TC
Location: 23436 - 23774 (+)
Type: TC
Location: 23436 - 23774 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.