Cluster: MurphyR_2019_SRR7351840_bin.4_CGC17
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: MurphyR_2019_SRR7351840_bin.4
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351840_bin.4_k141_5362 | MurphyR_2019_SRR7351840_bin.4_k141_5362_26 | 32622 | 34088 | - | 2.A.66.2.23 |
| pfam | MurphyR_2019_SRR7351840_bin.4_k141_5362 | MurphyR_2019_SRR7351840_bin.4_k141_5362_27 | 34173 | 35120 | - | ATPgrasp_TupA |
| pfam | MurphyR_2019_SRR7351840_bin.4_k141_5362 | MurphyR_2019_SRR7351840_bin.4_k141_5362_28 | 35264 | 36352 | - | EpsG |
| CAZyme | MurphyR_2019_SRR7351840_bin.4_k141_5362 | MurphyR_2019_SRR7351840_bin.4_k141_5362_29 | 36349 | 37452 | - | GT4 |
| pfam | MurphyR_2019_SRR7351840_bin.4_k141_5362 | MurphyR_2019_SRR7351840_bin.4_k141_5362_30 | 37449 | 38396 | - | C5-epim_C |
| CAZyme | MurphyR_2019_SRR7351840_bin.4_k141_5362 | MurphyR_2019_SRR7351840_bin.4_k141_5362_31 | 38396 | 39688 | - | GT4 |
| pfam | MurphyR_2019_SRR7351840_bin.4_k141_5362 | MurphyR_2019_SRR7351840_bin.4_k141_5362_32 | 39694 | 40965 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | MurphyR_2019_SRR7351840_bin.4_k141_5362 | MurphyR_2019_SRR7351840_bin.4_k141_5362_33 | 41009 | 41926 | - | GT2 |
| TC | MurphyR_2019_SRR7351840_bin.4_k141_5362 | MurphyR_2019_SRR7351840_bin.4_k141_5362_34 | 41930 | 42730 | - | 9.B.18.1.2 |
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_5362_26
Type: TC
Location: 32622 - 34088 (-)
Type: TC
Location: 32622 - 34088 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_5362_27
Type: pfam
Location: 34173 - 35120 (-)
Type: pfam
Location: 34173 - 35120 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_5362_28
Type: pfam
Location: 35264 - 36352 (-)
Type: pfam
Location: 35264 - 36352 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_5362_29
Type: CAZyme
Location: 36349 - 37452 (-)
Type: CAZyme
Location: 36349 - 37452 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_5362_30
Type: pfam
Location: 37449 - 38396 (-)
Type: pfam
Location: 37449 - 38396 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_5362_31
Type: CAZyme
Location: 38396 - 39688 (-)
Type: CAZyme
Location: 38396 - 39688 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_5362_32
Type: pfam
Location: 39694 - 40965 (-)
Type: pfam
Location: 39694 - 40965 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_5362_33
Type: CAZyme
Location: 41009 - 41926 (-)
Type: CAZyme
Location: 41009 - 41926 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_5362_34
Type: TC
Location: 41930 - 42730 (-)
Type: TC
Location: 41930 - 42730 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.