Cluster: MurphyR_2019_SRR7351840_bin.4_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7351840_bin.4
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351840_bin.4_k141_4873 | MurphyR_2019_SRR7351840_bin.4_k141_4873_139 | 144038 | 144805 | - | 3.A.1.103.1 |
| TC | MurphyR_2019_SRR7351840_bin.4_k141_4873 | MurphyR_2019_SRR7351840_bin.4_k141_4873_140 | 144818 | 145663 | - | 3.A.1.103.6 |
| CAZyme | MurphyR_2019_SRR7351840_bin.4_k141_4873 | MurphyR_2019_SRR7351840_bin.4_k141_4873_141 | 145825 | 146754 | + | GT81 |
| CAZyme | MurphyR_2019_SRR7351840_bin.4_k141_4873 | MurphyR_2019_SRR7351840_bin.4_k141_4873_142 | 146786 | 148627 | - | GT2 |
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_4873_139
Type: TC
Location: 144038 - 144805 (-)
Type: TC
Location: 144038 - 144805 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_4873_140
Type: TC
Location: 144818 - 145663 (-)
Type: TC
Location: 144818 - 145663 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_4873_141
Type: CAZyme
Location: 145825 - 146754 (+)
Type: CAZyme
Location: 145825 - 146754 (+)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_4873_142
Type: CAZyme
Location: 146786 - 148627 (-)
Type: CAZyme
Location: 146786 - 148627 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7351840_bin.4_k141_4873_140 | vegan > omnivore | 1.33791 | 0.00842 |
| MurphyR_2019_SRR7351840_bin.4_k141_4873_141 | vegan > omnivore | 2.34631 | 0.00842 |
| MurphyR_2019_SRR7351840_bin.4_k141_4873_142 | vegan > omnivore | 17.05665 | 0.00842 |
| MurphyR_2019_SRR7351840_bin.4_k141_4873_142 | vegetarian > omnivore | 12.59211 | 0.04823 |