Cluster: MurphyR_2019_SRR7351840_bin.4_CGC11
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7351840_bin.4
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351840_bin.4_k141_3131 | MurphyR_2019_SRR7351840_bin.4_k141_3131_2 | 1848 | 2330 | + | 4.A.6.1.16 |
| sulfatase | MurphyR_2019_SRR7351840_bin.4_k141_3131 | MurphyR_2019_SRR7351840_bin.4_k141_3131_3 | 2654 | 3706 | - | S1_4 |
| TF | MurphyR_2019_SRR7351840_bin.4_k141_3131 | MurphyR_2019_SRR7351840_bin.4_k141_3131_4 | 3913 | 4677 | + | HTH_DeoR |
| CAZyme | MurphyR_2019_SRR7351840_bin.4_k141_3131 | MurphyR_2019_SRR7351840_bin.4_k141_3131_5 | 4872 | 6293 | - | GH1 |
| TC | MurphyR_2019_SRR7351840_bin.4_k141_3131 | MurphyR_2019_SRR7351840_bin.4_k141_3131_6 | 6369 | 8147 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351840_bin.4_k141_3131 | MurphyR_2019_SRR7351840_bin.4_k141_3131_7 | 8423 | 9433 | + | LacI |
| CAZyme | MurphyR_2019_SRR7351840_bin.4_k141_3131 | MurphyR_2019_SRR7351840_bin.4_k141_3131_8 | 9632 | 11071 | - | GH1 |
| TC | MurphyR_2019_SRR7351840_bin.4_k141_3131 | MurphyR_2019_SRR7351840_bin.4_k141_3131_9 | 11138 | 12907 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351840_bin.4_k141_3131 | MurphyR_2019_SRR7351840_bin.4_k141_3131_10 | 13263 | 14267 | + | LacI |
| TC | MurphyR_2019_SRR7351840_bin.4_k141_3131 | MurphyR_2019_SRR7351840_bin.4_k141_3131_11 | 14482 | 14820 | + | 4.A.3.1.2 |
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_3131_2
Type: TC
Location: 1848 - 2330 (+)
Type: TC
Location: 1848 - 2330 (+)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_3131_3
Type: sulfatase
Location: 2654 - 3706 (-)
Type: sulfatase
Location: 2654 - 3706 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_3131_4
Type: TF
Location: 3913 - 4677 (+)
Type: TF
Location: 3913 - 4677 (+)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_3131_5
Type: CAZyme
Location: 4872 - 6293 (-)
Type: CAZyme
Location: 4872 - 6293 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_3131_6
Type: TC
Location: 6369 - 8147 (-)
Type: TC
Location: 6369 - 8147 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_3131_7
Type: TF
Location: 8423 - 9433 (+)
Type: TF
Location: 8423 - 9433 (+)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_3131_8
Type: CAZyme
Location: 9632 - 11071 (-)
Type: CAZyme
Location: 9632 - 11071 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_3131_9
Type: TC
Location: 11138 - 12907 (-)
Type: TC
Location: 11138 - 12907 (-)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_3131_10
Type: TF
Location: 13263 - 14267 (+)
Type: TF
Location: 13263 - 14267 (+)
Gene ID: MurphyR_2019_SRR7351840_bin.4_k141_3131_11
Type: TC
Location: 14482 - 14820 (+)
Type: TC
Location: 14482 - 14820 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.