Cluster: MurphyR_2019_SRR7351803_bin.9_CGC14
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351803_bin.9
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351803_bin.9_k141_24633 | MurphyR_2019_SRR7351803_bin.9_k141_24633_15 | 14330 | 15124 | - | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7351803_bin.9_k141_24633 | MurphyR_2019_SRR7351803_bin.9_k141_24633_16 | 15117 | 16040 | - | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7351803_bin.9_k141_24633 | MurphyR_2019_SRR7351803_bin.9_k141_24633_17 | 16245 | 17225 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351803_bin.9_k141_24633 | MurphyR_2019_SRR7351803_bin.9_k141_24633_18 | 17386 | 18174 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MurphyR_2019_SRR7351803_bin.9_k141_24633 | MurphyR_2019_SRR7351803_bin.9_k141_24633_19 | 18424 | 19827 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | MurphyR_2019_SRR7351803_bin.9_k141_24633 | MurphyR_2019_SRR7351803_bin.9_k141_24633_20 | 20009 | 20572 | - | 4.A.1.2.6 |
| peptidase | MurphyR_2019_SRR7351803_bin.9_k141_24633 | MurphyR_2019_SRR7351803_bin.9_k141_24633_21 | 20819 | 21718 | + | S09.UPW |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351803_bin.9_k141_24633 | MurphyR_2019_SRR7351803_bin.9_k141_24633_22 | 21766 | 22086 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MurphyR_2019_SRR7351803_bin.9_k141_24633 | MurphyR_2019_SRR7351803_bin.9_k141_24633_23 | 22208 | 24568 | + | 9.A.8.1.6 |
| TC | MurphyR_2019_SRR7351803_bin.9_k141_24633 | MurphyR_2019_SRR7351803_bin.9_k141_24633_24 | 24690 | 25886 | + | 2.A.1.2.18 |
| CAZyme | MurphyR_2019_SRR7351803_bin.9_k141_24633 | MurphyR_2019_SRR7351803_bin.9_k141_24633_25 | 26041 | 27417 | + | GH13_20 |
Gene ID: MurphyR_2019_SRR7351803_bin.9_k141_24633_15
Type: TC
Location: 14330 - 15124 (-)
Type: TC
Location: 14330 - 15124 (-)
Gene ID: MurphyR_2019_SRR7351803_bin.9_k141_24633_16
Type: TC
Location: 15117 - 16040 (-)
Type: TC
Location: 15117 - 16040 (-)
Gene ID: MurphyR_2019_SRR7351803_bin.9_k141_24633_17
Type: TC
Location: 16245 - 17225 (-)
Type: TC
Location: 16245 - 17225 (-)
Gene ID: MurphyR_2019_SRR7351803_bin.9_k141_24633_18
Type:
Location: 17386 - 18174 (-)
Type:
Location: 17386 - 18174 (-)
Gene ID: MurphyR_2019_SRR7351803_bin.9_k141_24633_19
Type: pfam
Location: 18424 - 19827 (-)
Type: pfam
Location: 18424 - 19827 (-)
Gene ID: MurphyR_2019_SRR7351803_bin.9_k141_24633_20
Type: TC
Location: 20009 - 20572 (-)
Type: TC
Location: 20009 - 20572 (-)
Gene ID: MurphyR_2019_SRR7351803_bin.9_k141_24633_21
Type: peptidase
Location: 20819 - 21718 (+)
Type: peptidase
Location: 20819 - 21718 (+)
Gene ID: MurphyR_2019_SRR7351803_bin.9_k141_24633_22
Type:
Location: 21766 - 22086 (+)
Type:
Location: 21766 - 22086 (+)
Gene ID: MurphyR_2019_SRR7351803_bin.9_k141_24633_23
Type: TC
Location: 22208 - 24568 (+)
Type: TC
Location: 22208 - 24568 (+)
Gene ID: MurphyR_2019_SRR7351803_bin.9_k141_24633_24
Type: TC
Location: 24690 - 25886 (+)
Type: TC
Location: 24690 - 25886 (+)
Gene ID: MurphyR_2019_SRR7351803_bin.9_k141_24633_25
Type: CAZyme
Location: 26041 - 27417 (+)
Type: CAZyme
Location: 26041 - 27417 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.