Cluster: MurphyR_2019_SRR7351801_bin.19_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351801_bin.19
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_237 | 259988 | 260782 | - | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_238 | 260775 | 261698 | - | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_239 | 261903 | 262883 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_240 | 263044 | 263829 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_241 | 264079 | 265482 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_242 | 265664 | 266227 | - | 4.A.1.2.6 |
| peptidase | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_243 | 266471 | 267370 | + | S09.UPW |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_244 | 267418 | 267738 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_245 | 267860 | 270220 | + | 9.A.8.1.6 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_246 | 270345 | 271541 | + | 2.A.1.2.18 |
| CAZyme | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_247 | 271695 | 273071 | + | GH13_20 |
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_237
Type: TC
Location: 259988 - 260782 (-)
Type: TC
Location: 259988 - 260782 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_238
Type: TC
Location: 260775 - 261698 (-)
Type: TC
Location: 260775 - 261698 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_239
Type: TC
Location: 261903 - 262883 (-)
Type: TC
Location: 261903 - 262883 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_240
Type:
Location: 263044 - 263829 (-)
Type:
Location: 263044 - 263829 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_241
Type: pfam
Location: 264079 - 265482 (-)
Type: pfam
Location: 264079 - 265482 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_242
Type: TC
Location: 265664 - 266227 (-)
Type: TC
Location: 265664 - 266227 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_243
Type: peptidase
Location: 266471 - 267370 (+)
Type: peptidase
Location: 266471 - 267370 (+)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_244
Type:
Location: 267418 - 267738 (+)
Type:
Location: 267418 - 267738 (+)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_245
Type: TC
Location: 267860 - 270220 (+)
Type: TC
Location: 267860 - 270220 (+)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_246
Type: TC
Location: 270345 - 271541 (+)
Type: TC
Location: 270345 - 271541 (+)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_247
Type: CAZyme
Location: 271695 - 273071 (+)
Type: CAZyme
Location: 271695 - 273071 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.