Cluster: MurphyR_2019_SRR7351801_bin.19_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7351801_bin.19
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_94 | 91680 | 93101 | - | GH1 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_95 | 93176 | 94954 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_96 | 95230 | 96240 | + | LacI |
| CAZyme | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_97 | 96430 | 97869 | - | GH1 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_98 | 97936 | 99711 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_99 | 100068 | 101072 | + | LacI |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_29924 | MurphyR_2019_SRR7351801_bin.19_k141_29924_100 | 101287 | 101625 | + | 4.A.3.1.2 |
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_94
Type: CAZyme
Location: 91680 - 93101 (-)
Type: CAZyme
Location: 91680 - 93101 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_95
Type: TC
Location: 93176 - 94954 (-)
Type: TC
Location: 93176 - 94954 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_96
Type: TF
Location: 95230 - 96240 (+)
Type: TF
Location: 95230 - 96240 (+)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_97
Type: CAZyme
Location: 96430 - 97869 (-)
Type: CAZyme
Location: 96430 - 97869 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_98
Type: TC
Location: 97936 - 99711 (-)
Type: TC
Location: 97936 - 99711 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_99
Type: TF
Location: 100068 - 101072 (+)
Type: TF
Location: 100068 - 101072 (+)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_29924_100
Type: TC
Location: 101287 - 101625 (+)
Type: TC
Location: 101287 - 101625 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.