Cluster: MurphyR_2019_SRR7351801_bin.19_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351801_bin.19
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351801_bin.19_k141_55258 | MurphyR_2019_SRR7351801_bin.19_k141_55258_99 | 102421 | 104154 | - | GH13_30 |
| STP | MurphyR_2019_SRR7351801_bin.19_k141_55258 | MurphyR_2019_SRR7351801_bin.19_k141_55258_100 | 104741 | 105487 | - | STAS |
| STP | MurphyR_2019_SRR7351801_bin.19_k141_55258 | MurphyR_2019_SRR7351801_bin.19_k141_55258_101 | 105566 | 107911 | - | GAF | SpoIIE |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_55258 | MurphyR_2019_SRR7351801_bin.19_k141_55258_102 | 108658 | 109686 | - | 3.A.1.5.36 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_55258 | MurphyR_2019_SRR7351801_bin.19_k141_55258_103 | 109686 | 110777 | - | 3.A.1.5.34 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_55258 | MurphyR_2019_SRR7351801_bin.19_k141_55258_104 | 110780 | 111715 | - | 3.A.1.5.11 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_55258 | MurphyR_2019_SRR7351801_bin.19_k141_55258_105 | 111730 | 112767 | - | 3.A.1.5.37 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_55258 | MurphyR_2019_SRR7351801_bin.19_k141_55258_106 | 112924 | 114600 | - | 3.A.1.5.35 |
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_55258_99
Type: CAZyme
Location: 102421 - 104154 (-)
Type: CAZyme
Location: 102421 - 104154 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_55258_100
Type: STP
Location: 104741 - 105487 (-)
Type: STP
Location: 104741 - 105487 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_55258_101
Type: STP
Location: 105566 - 107911 (-)
Type: STP
Location: 105566 - 107911 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_55258_102
Type: TC
Location: 108658 - 109686 (-)
Type: TC
Location: 108658 - 109686 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_55258_103
Type: TC
Location: 109686 - 110777 (-)
Type: TC
Location: 109686 - 110777 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_55258_104
Type: TC
Location: 110780 - 111715 (-)
Type: TC
Location: 110780 - 111715 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_55258_105
Type: TC
Location: 111730 - 112767 (-)
Type: TC
Location: 111730 - 112767 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_55258_106
Type: TC
Location: 112924 - 114600 (-)
Type: TC
Location: 112924 - 114600 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.