Cluster: MurphyR_2019_SRR7351801_bin.19_CGC1
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7351801_bin.19
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351801_bin.19_k141_19256 | MurphyR_2019_SRR7351801_bin.19_k141_19256_11 | 11882 | 13387 | + | GH77 |
| CAZyme | MurphyR_2019_SRR7351801_bin.19_k141_19256 | MurphyR_2019_SRR7351801_bin.19_k141_19256_12 | 13516 | 15783 | + | GT35 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_19256 | MurphyR_2019_SRR7351801_bin.19_k141_19256_13 | 16239 | 17438 | - | 3.A.1.1.22 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_19256 | MurphyR_2019_SRR7351801_bin.19_k141_19256_14 | 17507 | 18346 | - | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_19256 | MurphyR_2019_SRR7351801_bin.19_k141_19256_15 | 18346 | 19200 | - | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_19256 | MurphyR_2019_SRR7351801_bin.19_k141_19256_16 | 19288 | 20604 | - | 3.A.1.1.45 |
| TF | MurphyR_2019_SRR7351801_bin.19_k141_19256 | MurphyR_2019_SRR7351801_bin.19_k141_19256_17 | 20911 | 21630 | - | GntR |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351801_bin.19_k141_19256 | MurphyR_2019_SRR7351801_bin.19_k141_19256_18 | 21714 | 21833 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MurphyR_2019_SRR7351801_bin.19_k141_19256 | MurphyR_2019_SRR7351801_bin.19_k141_19256_19 | 21855 | 24305 | + | 4.A.1.1.8 |
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_19256_11
Type: CAZyme
Location: 11882 - 13387 (+)
Type: CAZyme
Location: 11882 - 13387 (+)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_19256_12
Type: CAZyme
Location: 13516 - 15783 (+)
Type: CAZyme
Location: 13516 - 15783 (+)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_19256_13
Type: TC
Location: 16239 - 17438 (-)
Type: TC
Location: 16239 - 17438 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_19256_14
Type: TC
Location: 17507 - 18346 (-)
Type: TC
Location: 17507 - 18346 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_19256_15
Type: TC
Location: 18346 - 19200 (-)
Type: TC
Location: 18346 - 19200 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_19256_16
Type: TC
Location: 19288 - 20604 (-)
Type: TC
Location: 19288 - 20604 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_19256_17
Type: TF
Location: 20911 - 21630 (-)
Type: TF
Location: 20911 - 21630 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_19256_18
Type:
Location: 21714 - 21833 (-)
Type:
Location: 21714 - 21833 (-)
Gene ID: MurphyR_2019_SRR7351801_bin.19_k141_19256_19
Type: TC
Location: 21855 - 24305 (+)
Type: TC
Location: 21855 - 24305 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.