Cluster: MurphyR_2019_SRR7351767_bin.5_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7351767_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351767_bin.5_k141_6549 | MurphyR_2019_SRR7351767_bin.5_k141_6549_1 | 2 | 931 | - | GH140 |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_6549 | MurphyR_2019_SRR7351767_bin.5_k141_6549_2 | 1141 | 2568 | - | 4.A.1.2.11 |
| peptidase | MurphyR_2019_SRR7351767_bin.5_k141_6549 | MurphyR_2019_SRR7351767_bin.5_k141_6549_3 | 3059 | 4396 | + | S09.UPW |
| pfam | MurphyR_2019_SRR7351767_bin.5_k141_6549 | MurphyR_2019_SRR7351767_bin.5_k141_6549_4 | 4661 | 6172 | + | Sde182_NH-like |
| CAZyme | MurphyR_2019_SRR7351767_bin.5_k141_6549 | MurphyR_2019_SRR7351767_bin.5_k141_6549_5 | 6453 | 7883 | - | GH1 |
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_6549_1
Type: CAZyme
Location: 2 - 931 (-)
Type: CAZyme
Location: 2 - 931 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_6549_2
Type: TC
Location: 1141 - 2568 (-)
Type: TC
Location: 1141 - 2568 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_6549_3
Type: peptidase
Location: 3059 - 4396 (+)
Type: peptidase
Location: 3059 - 4396 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_6549_4
Type: pfam
Location: 4661 - 6172 (+)
Type: pfam
Location: 4661 - 6172 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_6549_5
Type: CAZyme
Location: 6453 - 7883 (-)
Type: CAZyme
Location: 6453 - 7883 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.