Cluster: MurphyR_2019_SRR7351767_bin.5_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7351767_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351767_bin.5_k141_4183 | MurphyR_2019_SRR7351767_bin.5_k141_4183_4 | 4017 | 5522 | + | GH77 |
| CAZyme | MurphyR_2019_SRR7351767_bin.5_k141_4183 | MurphyR_2019_SRR7351767_bin.5_k141_4183_5 | 5651 | 7918 | + | GT35 |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_4183 | MurphyR_2019_SRR7351767_bin.5_k141_4183_6 | 8375 | 9574 | - | 3.A.1.1.22 |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_4183 | MurphyR_2019_SRR7351767_bin.5_k141_4183_7 | 9643 | 10482 | - | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_4183 | MurphyR_2019_SRR7351767_bin.5_k141_4183_8 | 10482 | 11336 | - | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_4183 | MurphyR_2019_SRR7351767_bin.5_k141_4183_9 | 11424 | 12740 | - | 3.A.1.1.45 |
| TF | MurphyR_2019_SRR7351767_bin.5_k141_4183 | MurphyR_2019_SRR7351767_bin.5_k141_4183_10 | 13047 | 13766 | - | GntR |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351767_bin.5_k141_4183 | MurphyR_2019_SRR7351767_bin.5_k141_4183_11 | 13850 | 13969 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_4183 | MurphyR_2019_SRR7351767_bin.5_k141_4183_12 | 13991 | 16441 | + | 4.A.1.1.8 |
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_4183_4
Type: CAZyme
Location: 4017 - 5522 (+)
Type: CAZyme
Location: 4017 - 5522 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_4183_5
Type: CAZyme
Location: 5651 - 7918 (+)
Type: CAZyme
Location: 5651 - 7918 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_4183_6
Type: TC
Location: 8375 - 9574 (-)
Type: TC
Location: 8375 - 9574 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_4183_7
Type: TC
Location: 9643 - 10482 (-)
Type: TC
Location: 9643 - 10482 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_4183_8
Type: TC
Location: 10482 - 11336 (-)
Type: TC
Location: 10482 - 11336 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_4183_9
Type: TC
Location: 11424 - 12740 (-)
Type: TC
Location: 11424 - 12740 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_4183_10
Type: TF
Location: 13047 - 13766 (-)
Type: TF
Location: 13047 - 13766 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_4183_11
Type:
Location: 13850 - 13969 (-)
Type:
Location: 13850 - 13969 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_4183_12
Type: TC
Location: 13991 - 16441 (+)
Type: TC
Location: 13991 - 16441 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.