Cluster: MurphyR_2019_SRR7351767_bin.5_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7351767_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_26 | 20287 | 21708 | - | GH1 |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_27 | 21784 | 23562 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_28 | 23838 | 24848 | + | LacI |
| CAZyme | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_29 | 25121 | 26560 | - | GH1 |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_30 | 26627 | 28402 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_31 | 28759 | 29763 | + | LacI |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_32 | 29977 | 30315 | + | 4.A.3.1.2 |
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_26
Type: CAZyme
Location: 20287 - 21708 (-)
Type: CAZyme
Location: 20287 - 21708 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_27
Type: TC
Location: 21784 - 23562 (-)
Type: TC
Location: 21784 - 23562 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_28
Type: TF
Location: 23838 - 24848 (+)
Type: TF
Location: 23838 - 24848 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_29
Type: CAZyme
Location: 25121 - 26560 (-)
Type: CAZyme
Location: 25121 - 26560 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_30
Type: TC
Location: 26627 - 28402 (-)
Type: TC
Location: 26627 - 28402 (-)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_31
Type: TF
Location: 28759 - 29763 (+)
Type: TF
Location: 28759 - 29763 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_32
Type: TC
Location: 29977 - 30315 (+)
Type: TC
Location: 29977 - 30315 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.