Cluster: MurphyR_2019_SRR7351767_bin.5_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351767_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_8 | 5979 | 6422 | + | 4.A.6.1.16 |
| pfam | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_9 | 6422 | 6703 | + | YajC |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_10 | 6740 | 7222 | + | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_11 | 7313 | 8113 | + | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_12 | 8103 | 9185 | + | 4.A.6.1.4 |
| TF | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_13 | 9370 | 10101 | + | GntR |
| STP | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_14 | 10216 | 11382 | + | SIS | SIS |
| CAZyme | MurphyR_2019_SRR7351767_bin.5_k141_13904 | MurphyR_2019_SRR7351767_bin.5_k141_13904_15 | 11501 | 12670 | + | CE9 |
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_8
Type: TC
Location: 5979 - 6422 (+)
Type: TC
Location: 5979 - 6422 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_9
Type: pfam
Location: 6422 - 6703 (+)
Type: pfam
Location: 6422 - 6703 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_10
Type: TC
Location: 6740 - 7222 (+)
Type: TC
Location: 6740 - 7222 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_11
Type: TC
Location: 7313 - 8113 (+)
Type: TC
Location: 7313 - 8113 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_12
Type: TC
Location: 8103 - 9185 (+)
Type: TC
Location: 8103 - 9185 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_13
Type: TF
Location: 9370 - 10101 (+)
Type: TF
Location: 9370 - 10101 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_14
Type: STP
Location: 10216 - 11382 (+)
Type: STP
Location: 10216 - 11382 (+)
Gene ID: MurphyR_2019_SRR7351767_bin.5_k141_13904_15
Type: CAZyme
Location: 11501 - 12670 (+)
Type: CAZyme
Location: 11501 - 12670 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7351767_bin.5_k141_13904_9 | vegan > omnivore | 1.12357 | 0.00701 |