Cluster: MurphyR_2019_SRR7351762_bin.14_CGC7
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351762_bin.14
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351762_bin.14_k141_10276 | MurphyR_2019_SRR7351762_bin.14_k141_10276_62 | 85859 | 87241 | - | GH4 |
| TC | MurphyR_2019_SRR7351762_bin.14_k141_10276 | MurphyR_2019_SRR7351762_bin.14_k141_10276_63 | 87245 | 88861 | - | 4.A.1.1.3 |
| pfam | MurphyR_2019_SRR7351762_bin.14_k141_10276 | MurphyR_2019_SRR7351762_bin.14_k141_10276_64 | 88961 | 89815 | - | PRD | PRD | CAT_RBD |
| TC | MurphyR_2019_SRR7351762_bin.14_k141_10276 | MurphyR_2019_SRR7351762_bin.14_k141_10276_65 | 89834 | 90346 | - | 4.A.1.2.11 |
| STP | MurphyR_2019_SRR7351762_bin.14_k141_10276 | MurphyR_2019_SRR7351762_bin.14_k141_10276_66 | 90690 | 91451 | - | Fer4 |
| TC | MurphyR_2019_SRR7351762_bin.14_k141_10276 | MurphyR_2019_SRR7351762_bin.14_k141_10276_67 | 92075 | 94324 | - | 1.I.1.1.3 |
| STP | MurphyR_2019_SRR7351762_bin.14_k141_10276 | MurphyR_2019_SRR7351762_bin.14_k141_10276_68 | 94913 | 95875 | + | FHA |
| STP | MurphyR_2019_SRR7351762_bin.14_k141_10276 | MurphyR_2019_SRR7351762_bin.14_k141_10276_69 | 96047 | 98131 | + | Pkinase |
| TC | MurphyR_2019_SRR7351762_bin.14_k141_10276 | MurphyR_2019_SRR7351762_bin.14_k141_10276_70 | 98383 | 100722 | + | 3.A.3.5.15 |
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_10276_62
Type: CAZyme
Location: 85859 - 87241 (-)
Type: CAZyme
Location: 85859 - 87241 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_10276_63
Type: TC
Location: 87245 - 88861 (-)
Type: TC
Location: 87245 - 88861 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_10276_64
Type: pfam
Location: 88961 - 89815 (-)
Type: pfam
Location: 88961 - 89815 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_10276_65
Type: TC
Location: 89834 - 90346 (-)
Type: TC
Location: 89834 - 90346 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_10276_66
Type: STP
Location: 90690 - 91451 (-)
Type: STP
Location: 90690 - 91451 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_10276_67
Type: TC
Location: 92075 - 94324 (-)
Type: TC
Location: 92075 - 94324 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_10276_68
Type: STP
Location: 94913 - 95875 (+)
Type: STP
Location: 94913 - 95875 (+)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_10276_69
Type: STP
Location: 96047 - 98131 (+)
Type: STP
Location: 96047 - 98131 (+)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_10276_70
Type: TC
Location: 98383 - 100722 (+)
Type: TC
Location: 98383 - 100722 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.