Cluster: MurphyR_2019_SRR7351762_bin.14_CGC4
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: MurphyR_2019_SRR7351762_bin.14
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351762_bin.14_k141_8366 | MurphyR_2019_SRR7351762_bin.14_k141_8366_30 | 29697 | 31118 | - | GH1 |
| TC | MurphyR_2019_SRR7351762_bin.14_k141_8366 | MurphyR_2019_SRR7351762_bin.14_k141_8366_31 | 31194 | 32972 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351762_bin.14_k141_8366 | MurphyR_2019_SRR7351762_bin.14_k141_8366_32 | 33248 | 34258 | + | LacI |
| TC | MurphyR_2019_SRR7351762_bin.14_k141_8366 | MurphyR_2019_SRR7351762_bin.14_k141_8366_33 | 34671 | 36431 | - | 4.A.3.1.1 |
| CAZyme | MurphyR_2019_SRR7351762_bin.14_k141_8366 | MurphyR_2019_SRR7351762_bin.14_k141_8366_34 | 36608 | 38050 | - | GH1 |
| TF | MurphyR_2019_SRR7351762_bin.14_k141_8366 | MurphyR_2019_SRR7351762_bin.14_k141_8366_35 | 38392 | 39429 | + | LacI |
| CAZyme | MurphyR_2019_SRR7351762_bin.14_k141_8366 | MurphyR_2019_SRR7351762_bin.14_k141_8366_36 | 39697 | 41136 | - | GH1 |
| TC | MurphyR_2019_SRR7351762_bin.14_k141_8366 | MurphyR_2019_SRR7351762_bin.14_k141_8366_37 | 41203 | 42978 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7351762_bin.14_k141_8366 | MurphyR_2019_SRR7351762_bin.14_k141_8366_38 | 43336 | 44340 | + | LacI |
| TC | MurphyR_2019_SRR7351762_bin.14_k141_8366 | MurphyR_2019_SRR7351762_bin.14_k141_8366_39 | 44555 | 44893 | + | 4.A.3.1.2 |
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_8366_30
Type: CAZyme
Location: 29697 - 31118 (-)
Type: CAZyme
Location: 29697 - 31118 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_8366_31
Type: TC
Location: 31194 - 32972 (-)
Type: TC
Location: 31194 - 32972 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_8366_32
Type: TF
Location: 33248 - 34258 (+)
Type: TF
Location: 33248 - 34258 (+)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_8366_33
Type: TC
Location: 34671 - 36431 (-)
Type: TC
Location: 34671 - 36431 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_8366_34
Type: CAZyme
Location: 36608 - 38050 (-)
Type: CAZyme
Location: 36608 - 38050 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_8366_35
Type: TF
Location: 38392 - 39429 (+)
Type: TF
Location: 38392 - 39429 (+)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_8366_36
Type: CAZyme
Location: 39697 - 41136 (-)
Type: CAZyme
Location: 39697 - 41136 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_8366_37
Type: TC
Location: 41203 - 42978 (-)
Type: TC
Location: 41203 - 42978 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_8366_38
Type: TF
Location: 43336 - 44340 (+)
Type: TF
Location: 43336 - 44340 (+)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_8366_39
Type: TC
Location: 44555 - 44893 (+)
Type: TC
Location: 44555 - 44893 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7351762_bin.14_k141_8366_35 | vegetarian > omnivore | 1.02734 | 0.03469 |